Hb_003688_090

Information

Type -
Description -
Location Contig3688: 55393-60607
Sequence    

Annotation

kegg
ID rcu:RCOM_1107030
description ATP synthase f1, gamma subunit, putative (EC:3.6.3.14)
nr
ID XP_012080377.1
description PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
swissprot
ID P26360
description ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2
trembl
ID A0A067K542
description ATP synthase subunit gamma OS=Jatropha curcas GN=JCGZ_11722 PE=3 SV=1
Gene Ontology
ID GO:0005618
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37970: 55620-60411 , PASA_asmbl_37971: 57790-57955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_090 0.0 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
2 Hb_010150_020 0.0767461036 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
3 Hb_009049_020 0.0812119189 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
4 Hb_007951_040 0.0826543459 - - signal peptidase family protein [Populus trichocarpa]
5 Hb_002073_190 0.0842604722 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
6 Hb_000035_110 0.0862566981 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
7 Hb_002398_030 0.0875605342 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_000208_260 0.0911624417 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
9 Hb_003897_040 0.0932489408 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
10 Hb_000261_230 0.0940245456 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
11 Hb_021943_080 0.0964241437 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
12 Hb_000494_080 0.0976085353 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
13 Hb_000243_160 0.0984309655 - - glutaredoxin-1, grx1, putative [Ricinus communis]
14 Hb_001377_310 0.1020635533 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
15 Hb_001188_060 0.1022920604 - - -
16 Hb_000445_050 0.1024718937 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
17 Hb_032990_010 0.103623669 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
18 Hb_000034_080 0.1037269817 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
19 Hb_003038_120 0.104891147 - - rer1 protein, putative [Ricinus communis]
20 Hb_000207_150 0.105086765 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]

Gene co-expression network

sample Hb_003688_090 Hb_003688_090 Hb_010150_020 Hb_010150_020 Hb_003688_090--Hb_010150_020 Hb_009049_020 Hb_009049_020 Hb_003688_090--Hb_009049_020 Hb_007951_040 Hb_007951_040 Hb_003688_090--Hb_007951_040 Hb_002073_190 Hb_002073_190 Hb_003688_090--Hb_002073_190 Hb_000035_110 Hb_000035_110 Hb_003688_090--Hb_000035_110 Hb_002398_030 Hb_002398_030 Hb_003688_090--Hb_002398_030 Hb_010150_020--Hb_000035_110 Hb_001377_310 Hb_001377_310 Hb_010150_020--Hb_001377_310 Hb_021374_010 Hb_021374_010 Hb_010150_020--Hb_021374_010 Hb_029904_020 Hb_029904_020 Hb_010150_020--Hb_029904_020 Hb_004020_040 Hb_004020_040 Hb_010150_020--Hb_004020_040 Hb_000208_260 Hb_000208_260 Hb_009049_020--Hb_000208_260 Hb_009049_020--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_009049_020--Hb_000445_050 Hb_008120_010 Hb_008120_010 Hb_009049_020--Hb_008120_010 Hb_058999_030 Hb_058999_030 Hb_009049_020--Hb_058999_030 Hb_002836_140 Hb_002836_140 Hb_007951_040--Hb_002836_140 Hb_002783_170 Hb_002783_170 Hb_007951_040--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_007951_040--Hb_000776_100 Hb_003038_120 Hb_003038_120 Hb_007951_040--Hb_003038_120 Hb_000915_080 Hb_000915_080 Hb_007951_040--Hb_000915_080 Hb_000035_470 Hb_000035_470 Hb_002073_190--Hb_000035_470 Hb_015807_050 Hb_015807_050 Hb_002073_190--Hb_015807_050 Hb_002073_190--Hb_000035_110 Hb_000000_150 Hb_000000_150 Hb_002073_190--Hb_000000_150 Hb_002073_190--Hb_001377_310 Hb_002272_130 Hb_002272_130 Hb_002073_190--Hb_002272_130 Hb_000035_110--Hb_001377_310 Hb_000005_220 Hb_000005_220 Hb_000035_110--Hb_000005_220 Hb_000035_110--Hb_004020_040 Hb_001635_160 Hb_001635_160 Hb_000035_110--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_000035_110--Hb_005460_050 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_002398_030--Hb_000445_050 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_002398_030--Hb_058999_030 Hb_002398_030--Hb_000035_110 Hb_002398_030--Hb_001635_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.167 16.4665 40.607 42.293 27.6954 43.0444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6582 15.9306 10.8286 21.8301 25.5578

CAGE analysis