Hb_010150_020

Information

Type transcription factor
Description TF Family: HMG
Location Contig10150: 28782-33309
Sequence    

Annotation

kegg
ID rcu:RCOM_0855030
description structure-specific recognition protein, putative (EC:1.3.1.74)
nr
ID XP_012082971.1
description PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
swissprot
ID O04235
description FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
trembl
ID A0A067K8N4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13146 PE=4 SV=1
Gene Ontology
ID GO:0005719
description fact complex subunit ssrp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00747: 28771-34488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010150_020 0.0 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
2 Hb_000035_110 0.06414981 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
3 Hb_001377_310 0.0729021953 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
4 Hb_003688_090 0.0767461036 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
5 Hb_021374_010 0.0827579791 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
6 Hb_029904_020 0.0839222014 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
7 Hb_004020_040 0.0853174495 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
8 Hb_000362_170 0.0854757533 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
9 Hb_160459_040 0.0858419471 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
10 Hb_001856_180 0.0858559347 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_000617_010 0.0862487252 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
12 Hb_021943_080 0.0862952966 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
13 Hb_012215_010 0.0864438994 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
14 Hb_000373_080 0.0877027436 - - PREDICTED: serine decarboxylase [Jatropha curcas]
15 Hb_002398_030 0.0882282316 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_005895_010 0.0906737709 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
17 Hb_003897_040 0.0914866363 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
18 Hb_120982_010 0.0929476051 - - hypothetical protein CICLE_v10003116mg, partial [Citrus clementina]
19 Hb_000170_090 0.0940259879 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
20 Hb_002073_190 0.0945084313 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010150_020 Hb_010150_020 Hb_000035_110 Hb_000035_110 Hb_010150_020--Hb_000035_110 Hb_001377_310 Hb_001377_310 Hb_010150_020--Hb_001377_310 Hb_003688_090 Hb_003688_090 Hb_010150_020--Hb_003688_090 Hb_021374_010 Hb_021374_010 Hb_010150_020--Hb_021374_010 Hb_029904_020 Hb_029904_020 Hb_010150_020--Hb_029904_020 Hb_004020_040 Hb_004020_040 Hb_010150_020--Hb_004020_040 Hb_000035_110--Hb_001377_310 Hb_000005_220 Hb_000005_220 Hb_000035_110--Hb_000005_220 Hb_000035_110--Hb_004020_040 Hb_001635_160 Hb_001635_160 Hb_000035_110--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_000035_110--Hb_005460_050 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_009049_020 Hb_009049_020 Hb_003688_090--Hb_009049_020 Hb_007951_040 Hb_007951_040 Hb_003688_090--Hb_007951_040 Hb_002073_190 Hb_002073_190 Hb_003688_090--Hb_002073_190 Hb_003688_090--Hb_000035_110 Hb_002398_030 Hb_002398_030 Hb_003688_090--Hb_002398_030 Hb_021374_010--Hb_004020_040 Hb_000227_220 Hb_000227_220 Hb_021374_010--Hb_000227_220 Hb_021374_010--Hb_000170_090 Hb_003943_010 Hb_003943_010 Hb_021374_010--Hb_003943_010 Hb_021374_010--Hb_001377_310 Hb_001089_030 Hb_001089_030 Hb_021374_010--Hb_001089_030 Hb_001021_220 Hb_001021_220 Hb_029904_020--Hb_001021_220 Hb_000208_260 Hb_000208_260 Hb_029904_020--Hb_000208_260 Hb_012215_010 Hb_012215_010 Hb_029904_020--Hb_012215_010 Hb_001948_130 Hb_001948_130 Hb_029904_020--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_004020_040--Hb_000227_220 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.5923 46.1806 66.177 59.1494 42.8118 77.9678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2863 24.2104 20.8659 40.3462 54.2256

CAGE analysis