Hb_001948_130

Information

Type -
Description -
Location Contig1948: 106258-118727
Sequence    

Annotation

kegg
ID rcu:RCOM_0307970
description hypothetical protein
nr
ID XP_012077789.1
description PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
swissprot
ID Q94AX2
description Protein PTST, chloroplastic OS=Arabidopsis thaliana GN=PTST PE=1 SV=1
trembl
ID A0A067KMZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13429 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19445: 106272-118487 , PASA_asmbl_19446: 112156-112686 , PASA_asmbl_19447: 108716-108969 , PASA_asmbl_19451: 114685-115153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001948_130 0.0 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
2 Hb_017295_010 0.076319246 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
3 Hb_000208_260 0.0816029932 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
4 Hb_001109_060 0.0831344322 - - amino acid transporter, putative [Ricinus communis]
5 Hb_000107_210 0.0852733711 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
6 Hb_029904_020 0.0852994988 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
7 Hb_000008_220 0.0855150415 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
8 Hb_032050_040 0.0859021238 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
9 Hb_000990_090 0.0893768873 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
10 Hb_028227_010 0.0905633165 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
11 Hb_000664_110 0.0905933362 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
12 Hb_058999_030 0.0914924852 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
13 Hb_009529_030 0.0938586687 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
14 Hb_000345_360 0.0953256533 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
15 Hb_000362_150 0.0963607742 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
16 Hb_012215_010 0.0986863167 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
17 Hb_004223_290 0.0988236 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
18 Hb_001635_160 0.0995352244 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
19 Hb_000035_410 0.099657012 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
20 Hb_001018_130 0.1001329637 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]

Gene co-expression network

sample Hb_001948_130 Hb_001948_130 Hb_017295_010 Hb_017295_010 Hb_001948_130--Hb_017295_010 Hb_000208_260 Hb_000208_260 Hb_001948_130--Hb_000208_260 Hb_001109_060 Hb_001109_060 Hb_001948_130--Hb_001109_060 Hb_000107_210 Hb_000107_210 Hb_001948_130--Hb_000107_210 Hb_029904_020 Hb_029904_020 Hb_001948_130--Hb_029904_020 Hb_000008_220 Hb_000008_220 Hb_001948_130--Hb_000008_220 Hb_017295_010--Hb_000107_210 Hb_009529_030 Hb_009529_030 Hb_017295_010--Hb_009529_030 Hb_005227_010 Hb_005227_010 Hb_017295_010--Hb_005227_010 Hb_000008_270 Hb_000008_270 Hb_017295_010--Hb_000008_270 Hb_002273_120 Hb_002273_120 Hb_017295_010--Hb_002273_120 Hb_017295_010--Hb_001109_060 Hb_009049_020 Hb_009049_020 Hb_000208_260--Hb_009049_020 Hb_058999_030 Hb_058999_030 Hb_000208_260--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_000208_260--Hb_002398_030 Hb_001188_060 Hb_001188_060 Hb_000208_260--Hb_001188_060 Hb_002248_110 Hb_002248_110 Hb_000208_260--Hb_002248_110 Hb_002942_060 Hb_002942_060 Hb_000208_260--Hb_002942_060 Hb_000086_440 Hb_000086_440 Hb_001109_060--Hb_000086_440 Hb_001109_060--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_000107_210--Hb_058999_030 Hb_006909_070 Hb_006909_070 Hb_000107_210--Hb_006909_070 Hb_000101_380 Hb_000101_380 Hb_000107_210--Hb_000101_380 Hb_000107_210--Hb_005227_010 Hb_012215_010 Hb_012215_010 Hb_000107_210--Hb_012215_010 Hb_001021_220 Hb_001021_220 Hb_029904_020--Hb_001021_220 Hb_029904_020--Hb_000208_260 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090 Hb_002876_320 Hb_002876_320 Hb_000008_220--Hb_002876_320 Hb_000009_400 Hb_000009_400 Hb_000008_220--Hb_000009_400 Hb_005000_320 Hb_005000_320 Hb_000008_220--Hb_005000_320 Hb_000008_220--Hb_058999_030 Hb_000760_020 Hb_000760_020 Hb_000008_220--Hb_000760_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.535 45.4005 40.3225 79.7907 56.4936 93.9376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.2492 20.4179 36.036 32.1743 53.4472

CAGE analysis