Hb_086022_010

Information

Type -
Description -
Location Contig86022: 8622-8918
Sequence    

Annotation

kegg
ID tcc:TCM_036287
description LYR family of Fe/S cluster biogenesis protein isoform 1
nr
ID XP_009586684.1
description PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
swissprot
ID Q9US02
description Succinate dehydrogenase assembly factor 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.12c PE=3 SV=1
trembl
ID A0A061FRG6
description LYR family of Fe/S cluster biogenesis protein isoform 1 OS=Theobroma cacao GN=TCM_036287 PE=4 SV=1
Gene Ontology
ID GO:0005622
description succinate dehydrogenase assembly factor 1 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60796: 8722-9151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086022_010 0.0 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
2 Hb_002217_380 0.058821362 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
3 Hb_004466_040 0.106508137 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
4 Hb_000608_110 0.113977866 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
5 Hb_000556_150 0.1140914133 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
6 Hb_008511_060 0.1199258269 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
7 Hb_007951_040 0.1213539228 - - signal peptidase family protein [Populus trichocarpa]
8 Hb_010053_040 0.1259135065 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
9 Hb_076874_010 0.1307862633 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
10 Hb_000103_310 0.1345927 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
11 Hb_000637_140 0.1388225899 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
12 Hb_162060_010 0.1411438514 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001501_080 0.1424690245 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
14 Hb_009189_020 0.1428373204 - - PREDICTED: CASP-like protein 4B4 [Jatropha curcas]
15 Hb_003925_070 0.1435024955 - - ATOZI1, putative [Ricinus communis]
16 Hb_000453_040 0.144923323 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
17 Hb_002485_030 0.1451117401 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
18 Hb_002960_150 0.1463635984 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
19 Hb_000608_350 0.1468029928 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
20 Hb_001124_020 0.1472362238 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]

Gene co-expression network

sample Hb_086022_010 Hb_086022_010 Hb_002217_380 Hb_002217_380 Hb_086022_010--Hb_002217_380 Hb_004466_040 Hb_004466_040 Hb_086022_010--Hb_004466_040 Hb_000608_110 Hb_000608_110 Hb_086022_010--Hb_000608_110 Hb_000556_150 Hb_000556_150 Hb_086022_010--Hb_000556_150 Hb_008511_060 Hb_008511_060 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_002217_380--Hb_008511_060 Hb_002217_380--Hb_000556_150 Hb_002217_380--Hb_000608_110 Hb_007919_080 Hb_007919_080 Hb_002217_380--Hb_007919_080 Hb_076874_010 Hb_076874_010 Hb_002217_380--Hb_076874_010 Hb_012322_020 Hb_012322_020 Hb_004466_040--Hb_012322_020 Hb_000103_310 Hb_000103_310 Hb_004466_040--Hb_000103_310 Hb_004466_040--Hb_000608_110 Hb_000696_010 Hb_000696_010 Hb_004466_040--Hb_000696_010 Hb_001124_020 Hb_001124_020 Hb_004466_040--Hb_001124_020 Hb_001501_080 Hb_001501_080 Hb_000608_110--Hb_001501_080 Hb_000751_030 Hb_000751_030 Hb_000608_110--Hb_000751_030 Hb_000494_080 Hb_000494_080 Hb_000608_110--Hb_000494_080 Hb_000608_110--Hb_007951_040 Hb_000760_020 Hb_000760_020 Hb_000608_110--Hb_000760_020 Hb_000096_120 Hb_000096_120 Hb_000608_110--Hb_000096_120 Hb_000392_370 Hb_000392_370 Hb_000556_150--Hb_000392_370 Hb_005463_130 Hb_005463_130 Hb_000556_150--Hb_005463_130 Hb_000556_150--Hb_007919_080 Hb_000556_150--Hb_001501_080 Hb_007904_210 Hb_007904_210 Hb_000556_150--Hb_007904_210 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_002836_140 Hb_002836_140 Hb_007951_040--Hb_002836_140 Hb_002783_170 Hb_002783_170 Hb_007951_040--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_007951_040--Hb_000776_100 Hb_003688_090 Hb_003688_090 Hb_007951_040--Hb_003688_090 Hb_003038_120 Hb_003038_120 Hb_007951_040--Hb_003038_120 Hb_000915_080 Hb_000915_080 Hb_007951_040--Hb_000915_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.2116 29.9639 89.1993 131.776 73.5912 80.0298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1894 32.9744 27.8137 17.4312 24.1464

CAGE analysis