Hb_010053_040

Information

Type -
Description -
Location Contig10053: 27639-29628
Sequence    

Annotation

kegg
ID tcc:TCM_001056
description RAB GTPase A4A
nr
ID XP_012081614.1
description PREDICTED: ras-related protein Rab11D [Jatropha curcas]
swissprot
ID Q40522
description Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1
trembl
ID A0A067K3Y4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18653 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab11a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00368: 27604-29449 , PASA_asmbl_00369: 29496-29623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010053_040 0.0 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
2 Hb_002965_040 0.1045735415 - - drought-responsive family protein [Populus trichocarpa]
3 Hb_000735_050 0.1047466889 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
4 Hb_005000_320 0.1067135042 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
5 Hb_000637_140 0.1070809688 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
6 Hb_003038_120 0.1098088962 - - rer1 protein, putative [Ricinus communis]
7 Hb_003891_070 0.110829691 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
8 Hb_000608_350 0.1129088323 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
9 Hb_000983_170 0.114790773 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
10 Hb_000608_110 0.1154015232 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
11 Hb_009393_200 0.1167527759 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
12 Hb_003746_030 0.1185452583 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
13 Hb_007951_040 0.1202454802 - - signal peptidase family protein [Populus trichocarpa]
14 Hb_000933_010 0.1204908068 - - -
15 Hb_116349_060 0.1208939582 - - PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
16 Hb_007163_060 0.1214688687 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
17 Hb_003897_040 0.1223744603 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
18 Hb_000494_080 0.1227850342 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
19 Hb_000453_040 0.123409623 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
20 Hb_000776_100 0.1238501036 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_010053_040 Hb_010053_040 Hb_002965_040 Hb_002965_040 Hb_010053_040--Hb_002965_040 Hb_000735_050 Hb_000735_050 Hb_010053_040--Hb_000735_050 Hb_005000_320 Hb_005000_320 Hb_010053_040--Hb_005000_320 Hb_000637_140 Hb_000637_140 Hb_010053_040--Hb_000637_140 Hb_003038_120 Hb_003038_120 Hb_010053_040--Hb_003038_120 Hb_003891_070 Hb_003891_070 Hb_010053_040--Hb_003891_070 Hb_000787_150 Hb_000787_150 Hb_002965_040--Hb_000787_150 Hb_003096_060 Hb_003096_060 Hb_002965_040--Hb_003096_060 Hb_001258_100 Hb_001258_100 Hb_002965_040--Hb_001258_100 Hb_000227_270 Hb_000227_270 Hb_002965_040--Hb_000227_270 Hb_000494_080 Hb_000494_080 Hb_002965_040--Hb_000494_080 Hb_000205_130 Hb_000205_130 Hb_002965_040--Hb_000205_130 Hb_000069_590 Hb_000069_590 Hb_000735_050--Hb_000069_590 Hb_003994_140 Hb_003994_140 Hb_000735_050--Hb_003994_140 Hb_000718_070 Hb_000718_070 Hb_000735_050--Hb_000718_070 Hb_000186_330 Hb_000186_330 Hb_000735_050--Hb_000186_330 Hb_000336_110 Hb_000336_110 Hb_000735_050--Hb_000336_110 Hb_001832_130 Hb_001832_130 Hb_000735_050--Hb_001832_130 Hb_000309_040 Hb_000309_040 Hb_005000_320--Hb_000309_040 Hb_000933_010 Hb_000933_010 Hb_005000_320--Hb_000933_010 Hb_002235_210 Hb_002235_210 Hb_005000_320--Hb_002235_210 Hb_001077_030 Hb_001077_030 Hb_005000_320--Hb_001077_030 Hb_001051_080 Hb_001051_080 Hb_005000_320--Hb_001051_080 Hb_000011_190 Hb_000011_190 Hb_005000_320--Hb_000011_190 Hb_000608_350 Hb_000608_350 Hb_000637_140--Hb_000608_350 Hb_007800_020 Hb_007800_020 Hb_000637_140--Hb_007800_020 Hb_162060_010 Hb_162060_010 Hb_000637_140--Hb_162060_010 Hb_008226_090 Hb_008226_090 Hb_000637_140--Hb_008226_090 Hb_000034_080 Hb_000034_080 Hb_000637_140--Hb_000034_080 Hb_000637_140--Hb_003038_120 Hb_000776_100 Hb_000776_100 Hb_003038_120--Hb_000776_100 Hb_003897_040 Hb_003897_040 Hb_003038_120--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_003038_120--Hb_032990_010 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_006588_070 Hb_006588_070 Hb_003038_120--Hb_006588_070 Hb_116349_060 Hb_116349_060 Hb_003891_070--Hb_116349_060 Hb_001269_200 Hb_001269_200 Hb_003891_070--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_003891_070--Hb_001807_010 Hb_002928_010 Hb_002928_010 Hb_003891_070--Hb_002928_010 Hb_003891_070--Hb_000735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.1386 48.5081 71.3474 80.3299 47.5795 55.7718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4181 26.4307 13.3618 21.7034 18.9248

CAGE analysis