Hb_001807_010

Information

Type -
Description -
Location Contig1807: 10023-11234
Sequence    

Annotation

kegg
ID mtr:MTR_6g077630
description hypothetical protein
nr
ID XP_003620136.1
description hypothetical protein MTR_6g077630 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID F6HE83
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g00480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17476: 10039-10933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001807_010 0.0 - - hypothetical protein MTR_6g077630 [Medicago truncatula]
2 Hb_002928_010 0.0946850351 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
3 Hb_001269_200 0.1028413352 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
4 Hb_000139_190 0.1055732478 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
5 Hb_039605_010 0.1079344084 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
6 Hb_000416_050 0.1086655492 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
7 Hb_004631_190 0.1108178475 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
8 Hb_000260_440 0.1135936356 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
9 Hb_027073_030 0.1145923916 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
10 Hb_002311_070 0.1157139474 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
11 Hb_000563_600 0.1172126774 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
12 Hb_000287_050 0.1172935848 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
13 Hb_001247_130 0.1188022586 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
14 Hb_185516_010 0.1189428018 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
15 Hb_007982_080 0.1199261217 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
16 Hb_001807_030 0.1201329712 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
17 Hb_002483_010 0.1204908363 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
18 Hb_001662_040 0.1213527732 - - DNA helicase, putative [Ricinus communis]
19 Hb_000162_030 0.1219857885 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
20 Hb_000983_120 0.1224853456 - - cyclin-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001807_010 Hb_001807_010 Hb_002928_010 Hb_002928_010 Hb_001807_010--Hb_002928_010 Hb_001269_200 Hb_001269_200 Hb_001807_010--Hb_001269_200 Hb_000139_190 Hb_000139_190 Hb_001807_010--Hb_000139_190 Hb_039605_010 Hb_039605_010 Hb_001807_010--Hb_039605_010 Hb_000416_050 Hb_000416_050 Hb_001807_010--Hb_000416_050 Hb_004631_190 Hb_004631_190 Hb_001807_010--Hb_004631_190 Hb_002928_010--Hb_039605_010 Hb_003994_140 Hb_003994_140 Hb_002928_010--Hb_003994_140 Hb_027073_030 Hb_027073_030 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_016734_090 Hb_016734_090 Hb_001269_200--Hb_016734_090 Hb_000563_330 Hb_000563_330 Hb_001269_200--Hb_000563_330 Hb_011918_050 Hb_011918_050 Hb_001269_200--Hb_011918_050 Hb_001269_200--Hb_039605_010 Hb_002739_130 Hb_002739_130 Hb_001269_200--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_001269_200--Hb_006452_160 Hb_000139_190--Hb_027073_030 Hb_010998_040 Hb_010998_040 Hb_000139_190--Hb_010998_040 Hb_000139_190--Hb_039605_010 Hb_032264_060 Hb_032264_060 Hb_000139_190--Hb_032264_060 Hb_010362_030 Hb_010362_030 Hb_000139_190--Hb_010362_030 Hb_000287_050 Hb_000287_050 Hb_000139_190--Hb_000287_050 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_039605_010--Hb_000287_050 Hb_039605_010--Hb_003994_140 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_039605_010--Hb_000563_330 Hb_000189_330 Hb_000189_330 Hb_000416_050--Hb_000189_330 Hb_000270_460 Hb_000270_460 Hb_000416_050--Hb_000270_460 Hb_000416_050--Hb_001418_040 Hb_001143_180 Hb_001143_180 Hb_000416_050--Hb_001143_180 Hb_000868_060 Hb_000868_060 Hb_000416_050--Hb_000868_060 Hb_001405_190 Hb_001405_190 Hb_004631_190--Hb_001405_190 Hb_009112_010 Hb_009112_010 Hb_004631_190--Hb_009112_010 Hb_000230_430 Hb_000230_430 Hb_004631_190--Hb_000230_430 Hb_001140_030 Hb_001140_030 Hb_004631_190--Hb_001140_030 Hb_000718_070 Hb_000718_070 Hb_004631_190--Hb_000718_070 Hb_000661_020 Hb_000661_020 Hb_004631_190--Hb_000661_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1234 7.75471 13.2056 5.83532 8.37725 6.09615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.07661 3.20207 4.86181 5.44673 2.32747

CAGE analysis