Hb_000718_070

Information

Type -
Description -
Location Contig718: 138345-148554
Sequence    

Annotation

kegg
ID rcu:RCOM_1617730
description hypothetical protein
nr
ID XP_002511975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8IWF6
description Protein DENND6A OS=Homo sapiens GN=DENND6A PE=1 SV=1
trembl
ID B9RE36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1617730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55511: 138269-149401 , PASA_asmbl_55512: 140432-140792 , PASA_asmbl_55513: 142896-143192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000718_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001077_030 0.0510046117 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
3 Hb_002311_070 0.057980053 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
4 Hb_003124_220 0.0660164667 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
5 Hb_004631_190 0.0699906408 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
6 Hb_003680_230 0.0744449023 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
7 Hb_001140_030 0.0756336374 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
8 Hb_000002_490 0.0762035772 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
9 Hb_002042_030 0.0767492253 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
10 Hb_001301_220 0.0778541628 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
11 Hb_000230_430 0.0798121289 - - catalytic, putative [Ricinus communis]
12 Hb_000116_060 0.0825768435 - - plant ubiquilin, putative [Ricinus communis]
13 Hb_001804_110 0.084252376 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
14 Hb_003994_140 0.0844726833 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002078_110 0.0848800086 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
16 Hb_000069_590 0.0856316594 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
17 Hb_000922_020 0.0865586365 - - protein binding protein, putative [Ricinus communis]
18 Hb_000309_040 0.0876912591 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
19 Hb_000563_600 0.0881519606 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
20 Hb_002379_050 0.088164842 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000718_070 Hb_000718_070 Hb_001077_030 Hb_001077_030 Hb_000718_070--Hb_001077_030 Hb_002311_070 Hb_002311_070 Hb_000718_070--Hb_002311_070 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_001077_030--Hb_002311_070 Hb_003096_060 Hb_003096_060 Hb_001077_030--Hb_003096_060 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020 Hb_000576_020 Hb_000576_020 Hb_002311_070--Hb_000576_020 Hb_000002_490 Hb_000002_490 Hb_002311_070--Hb_000002_490 Hb_004631_180 Hb_004631_180 Hb_002311_070--Hb_004631_180 Hb_000309_040 Hb_000309_040 Hb_002311_070--Hb_000309_040 Hb_001347_040 Hb_001347_040 Hb_003124_220--Hb_001347_040 Hb_002078_110 Hb_002078_110 Hb_003124_220--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_003124_220--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_003124_220--Hb_143395_010 Hb_000256_190 Hb_000256_190 Hb_003124_220--Hb_000256_190 Hb_001405_190 Hb_001405_190 Hb_004631_190--Hb_001405_190 Hb_009112_010 Hb_009112_010 Hb_004631_190--Hb_009112_010 Hb_000230_430 Hb_000230_430 Hb_004631_190--Hb_000230_430 Hb_004631_190--Hb_001140_030 Hb_000661_020 Hb_000661_020 Hb_004631_190--Hb_000661_020 Hb_007558_120 Hb_007558_120 Hb_003680_230--Hb_007558_120 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_006816_050 Hb_006816_050 Hb_003680_230--Hb_006816_050 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050 Hb_005188_060 Hb_005188_060 Hb_003680_230--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_003680_230--Hb_007943_120 Hb_001952_120 Hb_001952_120 Hb_001140_030--Hb_001952_120 Hb_010998_040 Hb_010998_040 Hb_001140_030--Hb_010998_040 Hb_032264_060 Hb_032264_060 Hb_001140_030--Hb_032264_060 Hb_005965_030 Hb_005965_030 Hb_001140_030--Hb_005965_030 Hb_001140_030--Hb_001405_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3425 10.432 11.6756 9.65315 14.9609 10.8746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33733 5.02559 5.69692 5.03806 4.62775

CAGE analysis