Hb_116349_060

Information

Type -
Description -
Location Contig116349: 32465-35782
Sequence    

Annotation

kegg
ID brp:103834563
description protein WVD2-like 1
nr
ID XP_009108881.1
description PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
swissprot
ID Q8GYX9
description Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=1 SV=1
trembl
ID M0S2R7
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05045: 32013-34843 , PASA_asmbl_05047: 35401-35730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_060 0.0 - - PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
2 Hb_003891_070 0.0996010071 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
3 Hb_000776_100 0.1008309254 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
4 Hb_003038_120 0.1008483629 - - rer1 protein, putative [Ricinus communis]
5 Hb_000120_550 0.1050409707 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
6 Hb_000737_030 0.1065488162 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
7 Hb_007951_040 0.1066306533 - - signal peptidase family protein [Populus trichocarpa]
8 Hb_002311_070 0.1099616895 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
9 Hb_002783_170 0.1130221215 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
10 Hb_000101_380 0.1132373442 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
11 Hb_003897_040 0.115285239 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
12 Hb_002837_060 0.1160274701 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
13 Hb_000236_490 0.1163682108 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
14 Hb_000579_070 0.1168667055 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
15 Hb_032990_010 0.1174083714 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
16 Hb_029866_100 0.1180713331 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
17 Hb_000933_010 0.1182430809 - - -
18 Hb_000414_050 0.1187753001 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
19 Hb_000120_430 0.1189702468 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
20 Hb_001418_040 0.1206338996 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]

Gene co-expression network

sample Hb_116349_060 Hb_116349_060 Hb_003891_070 Hb_003891_070 Hb_116349_060--Hb_003891_070 Hb_000776_100 Hb_000776_100 Hb_116349_060--Hb_000776_100 Hb_003038_120 Hb_003038_120 Hb_116349_060--Hb_003038_120 Hb_000120_550 Hb_000120_550 Hb_116349_060--Hb_000120_550 Hb_000737_030 Hb_000737_030 Hb_116349_060--Hb_000737_030 Hb_007951_040 Hb_007951_040 Hb_116349_060--Hb_007951_040 Hb_010053_040 Hb_010053_040 Hb_003891_070--Hb_010053_040 Hb_001269_200 Hb_001269_200 Hb_003891_070--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_003891_070--Hb_001807_010 Hb_002928_010 Hb_002928_010 Hb_003891_070--Hb_002928_010 Hb_000735_050 Hb_000735_050 Hb_003891_070--Hb_000735_050 Hb_000414_050 Hb_000414_050 Hb_000776_100--Hb_000414_050 Hb_000776_100--Hb_003038_120 Hb_000138_130 Hb_000138_130 Hb_000776_100--Hb_000138_130 Hb_006588_070 Hb_006588_070 Hb_000776_100--Hb_006588_070 Hb_000101_380 Hb_000101_380 Hb_000776_100--Hb_000101_380 Hb_002783_170 Hb_002783_170 Hb_000776_100--Hb_002783_170 Hb_003897_040 Hb_003897_040 Hb_003038_120--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_003038_120--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_003038_120--Hb_006588_070 Hb_000120_550--Hb_032990_010 Hb_000120_550--Hb_003897_040 Hb_161994_030 Hb_161994_030 Hb_000120_550--Hb_161994_030 Hb_000120_550--Hb_000737_030 Hb_000579_070 Hb_000579_070 Hb_000120_550--Hb_000579_070 Hb_000737_030--Hb_032990_010 Hb_001002_060 Hb_001002_060 Hb_000737_030--Hb_001002_060 Hb_001005_030 Hb_001005_030 Hb_000737_030--Hb_001005_030 Hb_004586_060 Hb_004586_060 Hb_000737_030--Hb_004586_060 Hb_000373_080 Hb_000373_080 Hb_000737_030--Hb_000373_080 Hb_001377_310 Hb_001377_310 Hb_000737_030--Hb_001377_310 Hb_002836_140 Hb_002836_140 Hb_007951_040--Hb_002836_140 Hb_007951_040--Hb_002783_170 Hb_007951_040--Hb_000776_100 Hb_003688_090 Hb_003688_090 Hb_007951_040--Hb_003688_090 Hb_007951_040--Hb_003038_120 Hb_000915_080 Hb_000915_080 Hb_007951_040--Hb_000915_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.573 5.19028 10.3453 11.7534 9.85392 7.63383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54229 5.77203 2.45151 8.04526 3.28576

CAGE analysis