Hb_161994_030

Information

Type -
Description -
Location Contig161994: 16413-31728
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14620g
description hypothetical protein
nr
ID CBI35192.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID A0A0D2SF91
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G384200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14556: 16387-19393 , PASA_asmbl_14558: 16366-19903 , PASA_asmbl_14559: 18248-18718 , PASA_asmbl_14561: 27433-31448 , PASA_asmbl_14562: 27463-31169 , PASA_asmbl_14563: 28065-28537 , PASA_asmbl_14565: 30523-31221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161994_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000640_070 0.0921173994 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
3 Hb_000252_050 0.0942900496 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
4 Hb_008397_010 0.0956304935 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
5 Hb_002784_030 0.0959890968 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
6 Hb_000120_550 0.1016913009 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
7 Hb_001194_020 0.1047837872 - - microtubule associated protein xmap215, putative [Ricinus communis]
8 Hb_001085_110 0.1055133201 - - T6D22.2 [Arabidopsis thaliana]
9 Hb_000001_170 0.1059230801 - - amino acid transporter, putative [Ricinus communis]
10 Hb_021374_010 0.1086727874 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
11 Hb_000175_410 0.1090124904 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
12 Hb_000011_270 0.1099549673 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
13 Hb_001552_030 0.1101750764 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_004109_370 0.1123594589 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_012215_010 0.1123685493 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
16 Hb_011231_020 0.1126021939 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
17 Hb_004204_130 0.112755341 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
18 Hb_001307_240 0.1132589983 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
19 Hb_031091_020 0.1138143794 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
20 Hb_001856_180 0.1139733181 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]

Gene co-expression network

sample Hb_161994_030 Hb_161994_030 Hb_000640_070 Hb_000640_070 Hb_161994_030--Hb_000640_070 Hb_000252_050 Hb_000252_050 Hb_161994_030--Hb_000252_050 Hb_008397_010 Hb_008397_010 Hb_161994_030--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_161994_030--Hb_002784_030 Hb_000120_550 Hb_000120_550 Hb_161994_030--Hb_000120_550 Hb_001194_020 Hb_001194_020 Hb_161994_030--Hb_001194_020 Hb_012215_010 Hb_012215_010 Hb_000640_070--Hb_012215_010 Hb_073973_150 Hb_073973_150 Hb_000640_070--Hb_073973_150 Hb_000640_070--Hb_008397_010 Hb_000640_070--Hb_002784_030 Hb_010272_010 Hb_010272_010 Hb_000640_070--Hb_010272_010 Hb_000640_070--Hb_001194_020 Hb_021374_010 Hb_021374_010 Hb_000252_050--Hb_021374_010 Hb_000227_220 Hb_000227_220 Hb_000252_050--Hb_000227_220 Hb_011231_020 Hb_011231_020 Hb_000252_050--Hb_011231_020 Hb_000027_050 Hb_000027_050 Hb_000252_050--Hb_000027_050 Hb_012760_100 Hb_012760_100 Hb_000252_050--Hb_012760_100 Hb_003943_010 Hb_003943_010 Hb_000252_050--Hb_003943_010 Hb_008397_010--Hb_001194_020 Hb_000336_020 Hb_000336_020 Hb_008397_010--Hb_000336_020 Hb_000284_230 Hb_000284_230 Hb_008397_010--Hb_000284_230 Hb_008397_010--Hb_073973_150 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160 Hb_001552_030 Hb_001552_030 Hb_002784_030--Hb_001552_030 Hb_002784_030--Hb_012215_010 Hb_002784_030--Hb_008397_010 Hb_002475_040 Hb_002475_040 Hb_002784_030--Hb_002475_040 Hb_002784_030--Hb_073973_150 Hb_032990_010 Hb_032990_010 Hb_000120_550--Hb_032990_010 Hb_003897_040 Hb_003897_040 Hb_000120_550--Hb_003897_040 Hb_000737_030 Hb_000737_030 Hb_000120_550--Hb_000737_030 Hb_000579_070 Hb_000579_070 Hb_000120_550--Hb_000579_070 Hb_116349_060 Hb_116349_060 Hb_000120_550--Hb_116349_060 Hb_001194_020--Hb_000284_230 Hb_001194_020--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_001194_020--Hb_006355_020 Hb_001059_130 Hb_001059_130 Hb_001194_020--Hb_001059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92688 1.50616 1.99912 2.62799 1.4706 2.7577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.630259 1.0524 0.531716 2.4141 2.29467

CAGE analysis