Hb_000186_330

Information

Type -
Description -
Location Contig186: 374742-381211
Sequence    

Annotation

kegg
ID rcu:RCOM_0903600
description hypothetical protein
nr
ID XP_012092360.1
description PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
swissprot
ID Q5XEZ5
description Calcium permeable stress-gated cation channel 1 OS=Arabidopsis thaliana GN=CSC1 PE=2 SV=1
trembl
ID B9RXG3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903600 PE=4 SV=1
Gene Ontology
ID GO:0016020
description calcium permeable stress-gated cation channel 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18259: 375623-375887 , PASA_asmbl_18260: 374659-381236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_330 0.0 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
2 Hb_003746_030 0.0681415201 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
3 Hb_000069_590 0.0758142414 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
4 Hb_000735_050 0.0972972928 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
5 Hb_002379_050 0.098425223 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
6 Hb_014361_150 0.0999405232 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
7 Hb_003994_140 0.1040018163 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007163_060 0.1041621534 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
9 Hb_005656_080 0.10422712 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
10 Hb_000718_070 0.1050985727 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010362_030 0.1102281178 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
12 Hb_001804_110 0.1116041048 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
13 Hb_010998_040 0.1163686039 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
14 Hb_000625_120 0.11657773 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
15 Hb_003605_050 0.1171902567 - - protein with unknown function [Ricinus communis]
16 Hb_000059_200 0.1177514397 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
17 Hb_039605_010 0.1190369261 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
18 Hb_000230_430 0.1191281373 - - catalytic, putative [Ricinus communis]
19 Hb_058551_010 0.1192072219 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_000122_010 0.1194476918 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000186_330 Hb_000186_330 Hb_003746_030 Hb_003746_030 Hb_000186_330--Hb_003746_030 Hb_000069_590 Hb_000069_590 Hb_000186_330--Hb_000069_590 Hb_000735_050 Hb_000735_050 Hb_000186_330--Hb_000735_050 Hb_002379_050 Hb_002379_050 Hb_000186_330--Hb_002379_050 Hb_014361_150 Hb_014361_150 Hb_000186_330--Hb_014361_150 Hb_003994_140 Hb_003994_140 Hb_000186_330--Hb_003994_140 Hb_001804_110 Hb_001804_110 Hb_003746_030--Hb_001804_110 Hb_007163_060 Hb_007163_060 Hb_003746_030--Hb_007163_060 Hb_000959_230 Hb_000959_230 Hb_003746_030--Hb_000959_230 Hb_010998_040 Hb_010998_040 Hb_003746_030--Hb_010998_040 Hb_004223_110 Hb_004223_110 Hb_003746_030--Hb_004223_110 Hb_000069_590--Hb_000735_050 Hb_000230_430 Hb_000230_430 Hb_000069_590--Hb_000230_430 Hb_000069_590--Hb_003994_140 Hb_000718_070 Hb_000718_070 Hb_000069_590--Hb_000718_070 Hb_000336_110 Hb_000336_110 Hb_000069_590--Hb_000336_110 Hb_000735_050--Hb_003994_140 Hb_000735_050--Hb_000718_070 Hb_000735_050--Hb_000336_110 Hb_001832_130 Hb_001832_130 Hb_000735_050--Hb_001832_130 Hb_002379_050--Hb_014361_150 Hb_006615_120 Hb_006615_120 Hb_002379_050--Hb_006615_120 Hb_000116_060 Hb_000116_060 Hb_002379_050--Hb_000116_060 Hb_002379_050--Hb_000718_070 Hb_002379_050--Hb_000230_430 Hb_000162_280 Hb_000162_280 Hb_002379_050--Hb_000162_280 Hb_000260_440 Hb_000260_440 Hb_014361_150--Hb_000260_440 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000760_020 Hb_000760_020 Hb_014361_150--Hb_000760_020 Hb_000125_200 Hb_000125_200 Hb_014361_150--Hb_000125_200 Hb_005306_160 Hb_005306_160 Hb_014361_150--Hb_005306_160 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_000563_330 Hb_000563_330 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9159 42.2832 54.8202 34.958 38.62 32.6224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.458 13.2612 19.608 13.603 7.76049

CAGE analysis