Hb_076874_010

Information

Type -
Description -
Location Contig76874: 1-1686
Sequence    

Annotation

kegg
ID tcc:TCM_020311
description Endoplasmic reticulum retention defective 2B
nr
ID XP_012085088.1
description PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
swissprot
ID Q8VWI1
description ER lumen protein-retaining receptor B OS=Arabidopsis thaliana GN=ERD2B PE=1 SV=1
trembl
ID A0A067K284
description ER lumen protein-retaining receptor OS=Jatropha curcas GN=JCGZ_17533 PE=3 SV=1
Gene Ontology
ID GO:0005789
description er lumen protein-retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076874_010 0.0 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
2 Hb_000025_050 0.0800086485 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
3 Hb_003925_070 0.0889294352 - - ATOZI1, putative [Ricinus communis]
4 Hb_106411_010 0.1151454546 - - Ribosomal protein S25 family protein [Theobroma cacao]
5 Hb_000608_110 0.1205566848 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
6 Hb_002530_010 0.1251441523 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
7 Hb_086022_010 0.1307862633 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
8 Hb_070469_010 0.1308748749 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
9 Hb_126295_010 0.1343887169 - - PREDICTED: protein SEH1 [Jatropha curcas]
10 Hb_004466_040 0.1360708076 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
11 Hb_000637_140 0.1377083021 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
12 Hb_002217_380 0.14005225 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
13 Hb_000453_040 0.1422489775 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
14 Hb_007951_040 0.1440730796 - - signal peptidase family protein [Populus trichocarpa]
15 Hb_162040_010 0.1442146701 - - -
16 Hb_010053_040 0.1448684499 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
17 Hb_011671_090 0.1457010535 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
18 Hb_001195_260 0.146370943 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
19 Hb_003038_120 0.1482704905 - - rer1 protein, putative [Ricinus communis]
20 Hb_002235_210 0.1488436299 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]

Gene co-expression network

sample Hb_076874_010 Hb_076874_010 Hb_000025_050 Hb_000025_050 Hb_076874_010--Hb_000025_050 Hb_003925_070 Hb_003925_070 Hb_076874_010--Hb_003925_070 Hb_106411_010 Hb_106411_010 Hb_076874_010--Hb_106411_010 Hb_000608_110 Hb_000608_110 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_086022_010 Hb_086022_010 Hb_076874_010--Hb_086022_010 Hb_000025_050--Hb_106411_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_011671_090 Hb_011671_090 Hb_000025_050--Hb_011671_090 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_000025_050--Hb_003925_070 Hb_003925_070--Hb_106411_010 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010 Hb_001752_040 Hb_001752_040 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_002508_010 Hb_002508_010 Hb_106411_010--Hb_002508_010 Hb_001501_080 Hb_001501_080 Hb_000608_110--Hb_001501_080 Hb_000751_030 Hb_000751_030 Hb_000608_110--Hb_000751_030 Hb_000494_080 Hb_000494_080 Hb_000608_110--Hb_000494_080 Hb_007951_040 Hb_007951_040 Hb_000608_110--Hb_007951_040 Hb_000760_020 Hb_000760_020 Hb_000608_110--Hb_000760_020 Hb_000096_120 Hb_000096_120 Hb_000608_110--Hb_000096_120 Hb_006588_070 Hb_006588_070 Hb_002530_010--Hb_006588_070 Hb_000959_270 Hb_000959_270 Hb_002530_010--Hb_000959_270 Hb_002235_210 Hb_002235_210 Hb_002530_010--Hb_002235_210 Hb_003299_030 Hb_003299_030 Hb_002530_010--Hb_003299_030 Hb_001195_260 Hb_001195_260 Hb_002530_010--Hb_001195_260 Hb_011310_210 Hb_011310_210 Hb_002530_010--Hb_011310_210 Hb_002217_380 Hb_002217_380 Hb_086022_010--Hb_002217_380 Hb_086022_010--Hb_004466_040 Hb_086022_010--Hb_000608_110 Hb_000556_150 Hb_000556_150 Hb_086022_010--Hb_000556_150 Hb_008511_060 Hb_008511_060 Hb_086022_010--Hb_008511_060 Hb_086022_010--Hb_007951_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0716 13.2578 23.2146 27.6242 22.7116 32.1076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6928 14.1635 5.74116 4.2744 3.98621

CAGE analysis