Hb_106411_010

Information

Type -
Description -
Location Contig106411: 1046-2131
Sequence    

Annotation

kegg
ID tcc:TCM_041388
description Ribosomal protein S25 family protein
nr
ID XP_007015794.1
description Ribosomal protein S25 family protein [Theobroma cacao]
swissprot
ID Q8GYL5
description 40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2
trembl
ID A0A061GVH0
description Ribosomal protein S25 family protein OS=Theobroma cacao GN=TCM_041388 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s25-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106411_010 0.0 - - Ribosomal protein S25 family protein [Theobroma cacao]
2 Hb_000025_050 0.0948082642 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
3 Hb_076874_010 0.1151454546 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
4 Hb_003925_070 0.1159254281 - - ATOZI1, putative [Ricinus communis]
5 Hb_001752_040 0.1224962148 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
6 Hb_005085_020 0.1370273721 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
7 Hb_002508_010 0.1371366991 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
8 Hb_004846_040 0.1387815765 transcription factor TF Family: HMG -
9 Hb_002530_010 0.1389371612 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
10 Hb_001124_020 0.1401878125 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
11 Hb_002007_180 0.141022147 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
12 Hb_004718_040 0.141654475 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
13 Hb_001902_130 0.1438119829 - - 60S ribosomal protein L36-2 [Morus notabilis]
14 Hb_001427_020 0.1457860791 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
15 Hb_000198_070 0.1463026487 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
16 Hb_000606_080 0.1463706961 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
17 Hb_140291_010 0.1464810331 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
18 Hb_041392_010 0.1470749315 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
19 Hb_011671_090 0.1480238713 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
20 Hb_183557_010 0.1493050941 - - hypothetical protein JCGZ_24847 [Jatropha curcas]

Gene co-expression network

sample Hb_106411_010 Hb_106411_010 Hb_000025_050 Hb_000025_050 Hb_106411_010--Hb_000025_050 Hb_076874_010 Hb_076874_010 Hb_106411_010--Hb_076874_010 Hb_003925_070 Hb_003925_070 Hb_106411_010--Hb_003925_070 Hb_001752_040 Hb_001752_040 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_002508_010 Hb_002508_010 Hb_106411_010--Hb_002508_010 Hb_000025_050--Hb_076874_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_011671_090 Hb_011671_090 Hb_000025_050--Hb_011671_090 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_000025_050--Hb_003925_070 Hb_076874_010--Hb_003925_070 Hb_000608_110 Hb_000608_110 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_086022_010 Hb_086022_010 Hb_076874_010--Hb_086022_010 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010 Hb_002411_130 Hb_002411_130 Hb_001752_040--Hb_002411_130 Hb_001752_040--Hb_000025_050 Hb_001767_120 Hb_001767_120 Hb_001752_040--Hb_001767_120 Hb_019813_010 Hb_019813_010 Hb_001752_040--Hb_019813_010 Hb_000803_110 Hb_000803_110 Hb_001752_040--Hb_000803_110 Hb_000976_260 Hb_000976_260 Hb_005085_020--Hb_000976_260 Hb_001142_050 Hb_001142_050 Hb_005085_020--Hb_001142_050 Hb_011013_010 Hb_011013_010 Hb_005085_020--Hb_011013_010 Hb_000012_020 Hb_000012_020 Hb_005085_020--Hb_000012_020 Hb_001488_340 Hb_001488_340 Hb_005085_020--Hb_001488_340 Hb_001910_020 Hb_001910_020 Hb_005085_020--Hb_001910_020 Hb_116596_010 Hb_116596_010 Hb_002508_010--Hb_116596_010 Hb_041392_010 Hb_041392_010 Hb_002508_010--Hb_041392_010 Hb_002508_010--Hb_001767_120 Hb_150204_010 Hb_150204_010 Hb_002508_010--Hb_150204_010 Hb_002508_010--Hb_000025_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
209.996 88.0221 230.518 269.801 215.581 506.879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.073 246.4 79.5968 63.3843 57.5303

CAGE analysis