Hb_019813_010

Information

Type -
Description -
Location Contig19813: 12583-16119
Sequence    

Annotation

kegg
ID rcu:RCOM_1175380
description hypothetical protein
nr
ID XP_012088298.1
description PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25800 PE=4 SV=1
Gene Ontology
ID GO:0016740
description PREDICTED: uncharacterized protein LOC105646947

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19904: 12589-16631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019813_010 0.0 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
2 Hb_002301_260 0.0780807283 - - hypothetical protein MIMGU_mgv1a0031591mg, partial [Erythranthe guttata]
3 Hb_000160_220 0.088368956 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
4 Hb_002960_160 0.091847111 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
5 Hb_046931_010 0.0942737986 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
6 Hb_000939_060 0.094846986 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
7 Hb_003847_120 0.0953841622 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_003124_130 0.0993933491 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
9 Hb_058702_010 0.1001699559 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
10 Hb_006951_020 0.1039053439 - - Rop3 [Hevea brasiliensis]
11 Hb_002716_140 0.1042727592 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
12 Hb_031862_180 0.1064274096 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
13 Hb_010193_050 0.1073761041 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009151_020 0.108637333 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
15 Hb_008714_020 0.1091482003 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
16 Hb_004970_150 0.1092170013 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
17 Hb_000796_190 0.1094404752 - - hypothetical protein F383_31148 [Gossypium arboreum]
18 Hb_056196_050 0.1095965171 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
19 Hb_000755_030 0.1097815157 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
20 Hb_000029_320 0.1102929661 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_019813_010 Hb_019813_010 Hb_002301_260 Hb_002301_260 Hb_019813_010--Hb_002301_260 Hb_000160_220 Hb_000160_220 Hb_019813_010--Hb_000160_220 Hb_002960_160 Hb_002960_160 Hb_019813_010--Hb_002960_160 Hb_046931_010 Hb_046931_010 Hb_019813_010--Hb_046931_010 Hb_000939_060 Hb_000939_060 Hb_019813_010--Hb_000939_060 Hb_003847_120 Hb_003847_120 Hb_019813_010--Hb_003847_120 Hb_000671_110 Hb_000671_110 Hb_002301_260--Hb_000671_110 Hb_000951_110 Hb_000951_110 Hb_002301_260--Hb_000951_110 Hb_020665_030 Hb_020665_030 Hb_002301_260--Hb_020665_030 Hb_003656_180 Hb_003656_180 Hb_002301_260--Hb_003656_180 Hb_002301_260--Hb_003847_120 Hb_058702_010 Hb_058702_010 Hb_000160_220--Hb_058702_010 Hb_000567_050 Hb_000567_050 Hb_000160_220--Hb_000567_050 Hb_010180_040 Hb_010180_040 Hb_000160_220--Hb_010180_040 Hb_010931_040 Hb_010931_040 Hb_000160_220--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_000160_220--Hb_187739_020 Hb_003428_070 Hb_003428_070 Hb_000160_220--Hb_003428_070 Hb_005494_020 Hb_005494_020 Hb_002960_160--Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_002960_160--Hb_000567_010 Hb_063716_080 Hb_063716_080 Hb_002960_160--Hb_063716_080 Hb_000796_190 Hb_000796_190 Hb_002960_160--Hb_000796_190 Hb_000743_040 Hb_000743_040 Hb_002960_160--Hb_000743_040 Hb_002044_060 Hb_002044_060 Hb_002960_160--Hb_002044_060 Hb_011030_010 Hb_011030_010 Hb_046931_010--Hb_011030_010 Hb_000531_090 Hb_000531_090 Hb_046931_010--Hb_000531_090 Hb_010193_050 Hb_010193_050 Hb_046931_010--Hb_010193_050 Hb_000787_170 Hb_000787_170 Hb_046931_010--Hb_000787_170 Hb_000755_030 Hb_000755_030 Hb_046931_010--Hb_000755_030 Hb_000939_060--Hb_000787_170 Hb_000394_190 Hb_000394_190 Hb_000939_060--Hb_000394_190 Hb_031091_010 Hb_031091_010 Hb_000939_060--Hb_031091_010 Hb_001946_300 Hb_001946_300 Hb_000939_060--Hb_001946_300 Hb_001771_120 Hb_001771_120 Hb_000939_060--Hb_001771_120 Hb_000140_330 Hb_000140_330 Hb_000939_060--Hb_000140_330 Hb_015026_050 Hb_015026_050 Hb_003847_120--Hb_015026_050 Hb_003847_120--Hb_020665_030 Hb_001473_090 Hb_001473_090 Hb_003847_120--Hb_001473_090 Hb_006915_060 Hb_006915_060 Hb_003847_120--Hb_006915_060 Hb_000475_020 Hb_000475_020 Hb_003847_120--Hb_000475_020 Hb_000029_320 Hb_000029_320 Hb_003847_120--Hb_000029_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1242 24.6138 11.5673 18.3029 26.9875 51.7057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5289 15.1911 10.8429 8.57504 13.506

CAGE analysis