Hb_000671_110

Information

Type -
Description -
Location Contig671: 142907-152916
Sequence    

Annotation

kegg
ID rcu:RCOM_1267370
description hypothetical protein
nr
ID KDP42852.1
description hypothetical protein JCGZ_23794 [Jatropha curcas]
swissprot
ID O42260
description Gem-associated protein 2 OS=Xenopus laevis GN=gemin2 PE=2 SV=1
trembl
ID A0A067L365
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23794 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53428: 143828-144009 , PASA_asmbl_53429: 144082-146535 , PASA_asmbl_53430: 150150-152692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_110 0.0 - - hypothetical protein JCGZ_23794 [Jatropha curcas]
2 Hb_002301_260 0.0760188182 - - hypothetical protein MIMGU_mgv1a0031591mg, partial [Erythranthe guttata]
3 Hb_004096_100 0.0829593239 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
4 Hb_000951_110 0.0853893111 - - heat shock protein, putative [Ricinus communis]
5 Hb_001025_080 0.0885581053 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
6 Hb_002903_080 0.1026406418 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
7 Hb_020665_030 0.1028263319 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005914_060 0.1055042704 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
9 Hb_000062_430 0.1059065521 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
10 Hb_000866_470 0.1065536695 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
11 Hb_009151_020 0.1070272223 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
12 Hb_034552_020 0.1082871517 - - -
13 Hb_007108_030 0.108946516 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002737_070 0.1091906342 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
15 Hb_001752_030 0.109409512 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
16 Hb_022693_030 0.1107472092 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
17 Hb_000173_510 0.1120726385 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
18 Hb_011139_030 0.1142125265 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
19 Hb_000347_570 0.1148400595 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
20 Hb_001473_090 0.1148541199 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]

Gene co-expression network

sample Hb_000671_110 Hb_000671_110 Hb_002301_260 Hb_002301_260 Hb_000671_110--Hb_002301_260 Hb_004096_100 Hb_004096_100 Hb_000671_110--Hb_004096_100 Hb_000951_110 Hb_000951_110 Hb_000671_110--Hb_000951_110 Hb_001025_080 Hb_001025_080 Hb_000671_110--Hb_001025_080 Hb_002903_080 Hb_002903_080 Hb_000671_110--Hb_002903_080 Hb_020665_030 Hb_020665_030 Hb_000671_110--Hb_020665_030 Hb_019813_010 Hb_019813_010 Hb_002301_260--Hb_019813_010 Hb_002301_260--Hb_000951_110 Hb_002301_260--Hb_020665_030 Hb_003656_180 Hb_003656_180 Hb_002301_260--Hb_003656_180 Hb_003847_120 Hb_003847_120 Hb_002301_260--Hb_003847_120 Hb_003966_030 Hb_003966_030 Hb_004096_100--Hb_003966_030 Hb_001488_410 Hb_001488_410 Hb_004096_100--Hb_001488_410 Hb_004102_140 Hb_004102_140 Hb_004096_100--Hb_004102_140 Hb_010381_060 Hb_010381_060 Hb_004096_100--Hb_010381_060 Hb_003428_070 Hb_003428_070 Hb_004096_100--Hb_003428_070 Hb_174821_010 Hb_174821_010 Hb_004096_100--Hb_174821_010 Hb_000832_130 Hb_000832_130 Hb_000951_110--Hb_000832_130 Hb_000951_110--Hb_020665_030 Hb_002471_210 Hb_002471_210 Hb_000951_110--Hb_002471_210 Hb_007108_030 Hb_007108_030 Hb_000951_110--Hb_007108_030 Hb_000785_040 Hb_000785_040 Hb_001025_080--Hb_000785_040 Hb_001025_080--Hb_004096_100 Hb_001025_080--Hb_004102_140 Hb_000007_280 Hb_000007_280 Hb_001025_080--Hb_000007_280 Hb_001473_090 Hb_001473_090 Hb_001025_080--Hb_001473_090 Hb_003044_020 Hb_003044_020 Hb_001025_080--Hb_003044_020 Hb_000436_040 Hb_000436_040 Hb_002903_080--Hb_000436_040 Hb_002903_080--Hb_004096_100 Hb_081879_030 Hb_081879_030 Hb_002903_080--Hb_081879_030 Hb_003464_020 Hb_003464_020 Hb_002903_080--Hb_003464_020 Hb_010931_040 Hb_010931_040 Hb_002903_080--Hb_010931_040 Hb_000347_130 Hb_000347_130 Hb_002903_080--Hb_000347_130 Hb_009151_020 Hb_009151_020 Hb_020665_030--Hb_009151_020 Hb_000329_130 Hb_000329_130 Hb_020665_030--Hb_000329_130 Hb_000347_570 Hb_000347_570 Hb_020665_030--Hb_000347_570 Hb_000714_050 Hb_000714_050 Hb_020665_030--Hb_000714_050 Hb_020665_030--Hb_003847_120 Hb_000320_200 Hb_000320_200 Hb_020665_030--Hb_000320_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.48545 4.65351 4.39737 3.30945 8.95621 13.4566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35829 5.55121 3.28947 3.99392 4.36697

CAGE analysis