Hb_002903_080

Information

Type -
Description -
Location Contig2903: 103109-108997
Sequence    

Annotation

kegg
ID tcc:TCM_029917
description Proline-rich spliceosome-associated family protein isoform 1
nr
ID XP_012091562.1
description PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
swissprot
ID Q13435
description Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2
trembl
ID A0A067JLP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21406 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor 3b subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30437: 103087-108724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_080 0.0 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
2 Hb_000436_040 0.0798382334 - - PREDICTED: transportin-1 [Jatropha curcas]
3 Hb_004096_100 0.0809015009 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
4 Hb_081879_030 0.0834984169 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
5 Hb_003464_020 0.0880081477 - - srpk, putative [Ricinus communis]
6 Hb_010931_040 0.0893427656 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
7 Hb_000347_130 0.0900219635 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
8 Hb_000329_490 0.0926085357 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
9 Hb_000160_220 0.0926663145 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
10 Hb_000209_070 0.0942687408 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
11 Hb_000029_320 0.0947969174 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
12 Hb_001473_090 0.096242852 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
13 Hb_058702_010 0.096765931 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
14 Hb_000567_010 0.0971106708 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
15 Hb_004450_010 0.0982321829 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
16 Hb_009151_020 0.0991986887 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
17 Hb_001488_410 0.1001141616 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
18 Hb_021409_170 0.1007113315 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
19 Hb_000059_150 0.1013867984 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
20 Hb_000347_570 0.1019892359 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002903_080 Hb_002903_080 Hb_000436_040 Hb_000436_040 Hb_002903_080--Hb_000436_040 Hb_004096_100 Hb_004096_100 Hb_002903_080--Hb_004096_100 Hb_081879_030 Hb_081879_030 Hb_002903_080--Hb_081879_030 Hb_003464_020 Hb_003464_020 Hb_002903_080--Hb_003464_020 Hb_010931_040 Hb_010931_040 Hb_002903_080--Hb_010931_040 Hb_000347_130 Hb_000347_130 Hb_002903_080--Hb_000347_130 Hb_021409_170 Hb_021409_170 Hb_000436_040--Hb_021409_170 Hb_000023_190 Hb_000023_190 Hb_000436_040--Hb_000023_190 Hb_000436_040--Hb_000347_130 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240 Hb_002893_150 Hb_002893_150 Hb_000436_040--Hb_002893_150 Hb_003966_030 Hb_003966_030 Hb_004096_100--Hb_003966_030 Hb_001488_410 Hb_001488_410 Hb_004096_100--Hb_001488_410 Hb_004102_140 Hb_004102_140 Hb_004096_100--Hb_004102_140 Hb_010381_060 Hb_010381_060 Hb_004096_100--Hb_010381_060 Hb_003428_070 Hb_003428_070 Hb_004096_100--Hb_003428_070 Hb_174821_010 Hb_174821_010 Hb_004096_100--Hb_174821_010 Hb_081879_030--Hb_000347_130 Hb_081879_030--Hb_000436_040 Hb_000743_050 Hb_000743_050 Hb_081879_030--Hb_000743_050 Hb_025012_010 Hb_025012_010 Hb_081879_030--Hb_025012_010 Hb_042487_010 Hb_042487_010 Hb_081879_030--Hb_042487_010 Hb_003464_020--Hb_000023_190 Hb_003464_020--Hb_010381_060 Hb_003464_020--Hb_021409_170 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_010931_040--Hb_003464_020 Hb_002235_160 Hb_002235_160 Hb_010931_040--Hb_002235_160 Hb_010931_040--Hb_002044_060 Hb_001085_320 Hb_001085_320 Hb_010931_040--Hb_001085_320 Hb_010931_040--Hb_000023_190 Hb_010931_040--Hb_000567_050 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_000347_130--Hb_025012_010 Hb_000347_130--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.5597 18.6274 15.9264 18.4934 44.7149 72.6742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6071 15.9321 10.995 25.2972 16.9265

CAGE analysis