Hb_187739_020

Information

Type -
Description -
Location Contig187739: 14890-16640
Sequence    

Annotation

kegg
ID rcu:RCOM_1677160
description B2 protein, putative
nr
ID XP_012070379.1
description PREDICTED: B2 protein [Jatropha curcas]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067LCT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18506: 15076-16653 , PASA_asmbl_18507: 17454-18249
cDNA
(Sanger)
(ID:Location)		 011_I19.ab1: 15636-16652

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187739_020 0.0 - - PREDICTED: B2 protein [Jatropha curcas]
2 Hb_000866_030 0.0748754212 - - hypothetical protein RCOM_1615820 [Ricinus communis]
3 Hb_002982_040 0.0769618921 - - mta/sah nucleosidase, putative [Ricinus communis]
4 Hb_003656_140 0.0818016876 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
5 Hb_000160_220 0.0856651014 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
6 Hb_031862_180 0.0858431433 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
7 Hb_008714_020 0.0889994136 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
8 Hb_003641_060 0.0910284482 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
9 Hb_004450_010 0.0927841006 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
10 Hb_002942_160 0.0947857843 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
11 Hb_002027_270 0.0958457378 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
12 Hb_004881_020 0.096341016 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
13 Hb_002784_060 0.0977514747 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
14 Hb_004934_070 0.0980370449 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
15 Hb_007317_190 0.0981271204 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
16 Hb_001158_220 0.099269454 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
17 Hb_002067_120 0.0994852427 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
18 Hb_006913_040 0.1000846934 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
19 Hb_002044_060 0.1004855913 - - elongation factor ts, putative [Ricinus communis]
20 Hb_008695_120 0.1008351716 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_187739_020 Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_187739_020--Hb_000866_030 Hb_002982_040 Hb_002982_040 Hb_187739_020--Hb_002982_040 Hb_003656_140 Hb_003656_140 Hb_187739_020--Hb_003656_140 Hb_000160_220 Hb_000160_220 Hb_187739_020--Hb_000160_220 Hb_031862_180 Hb_031862_180 Hb_187739_020--Hb_031862_180 Hb_008714_020 Hb_008714_020 Hb_187739_020--Hb_008714_020 Hb_006913_040 Hb_006913_040 Hb_000866_030--Hb_006913_040 Hb_000866_030--Hb_008714_020 Hb_000866_030--Hb_002982_040 Hb_027028_020 Hb_027028_020 Hb_000866_030--Hb_027028_020 Hb_002942_160 Hb_002942_160 Hb_000866_030--Hb_002942_160 Hb_000031_220 Hb_000031_220 Hb_002982_040--Hb_000031_220 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_185830_020 Hb_185830_020 Hb_002982_040--Hb_185830_020 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160 Hb_002023_020 Hb_002023_020 Hb_003656_140--Hb_002023_020 Hb_137403_010 Hb_137403_010 Hb_003656_140--Hb_137403_010 Hb_041392_010 Hb_041392_010 Hb_003656_140--Hb_041392_010 Hb_150360_010 Hb_150360_010 Hb_003656_140--Hb_150360_010 Hb_003656_140--Hb_000866_030 Hb_058702_010 Hb_058702_010 Hb_000160_220--Hb_058702_010 Hb_000567_050 Hb_000567_050 Hb_000160_220--Hb_000567_050 Hb_010180_040 Hb_010180_040 Hb_000160_220--Hb_010180_040 Hb_010931_040 Hb_010931_040 Hb_000160_220--Hb_010931_040 Hb_003428_070 Hb_003428_070 Hb_000160_220--Hb_003428_070 Hb_002716_140 Hb_002716_140 Hb_031862_180--Hb_002716_140 Hb_007643_050 Hb_007643_050 Hb_031862_180--Hb_007643_050 Hb_000364_080 Hb_000364_080 Hb_031862_180--Hb_000364_080 Hb_008695_120 Hb_008695_120 Hb_031862_180--Hb_008695_120 Hb_002067_020 Hb_002067_020 Hb_031862_180--Hb_002067_020 Hb_001019_170 Hb_001019_170 Hb_008714_020--Hb_001019_170 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.063 80.6197 33.3852 77.3969 96.5133 216.292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.208 63.9215 41.7328 55.9771 31.3463

CAGE analysis