Hb_185830_020

Information

Type -
Description -
Location Contig185830: 4843-11252
Sequence    

Annotation

kegg
ID rcu:RCOM_0820320
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID AIU41650.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZUT0
description ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1
trembl
ID A0A097P9R1
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG20 PE=2 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18202: 4965-8159 , PASA_asmbl_18203: 4927-8147 , PASA_asmbl_18204: 4927-8147
cDNA
(Sanger)
(ID:Location)		 049_B22.ab1: 5942-8140

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185830_020 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_003847_080 0.0575653259 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
3 Hb_010691_060 0.0726719093 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
4 Hb_002982_040 0.0740172873 - - mta/sah nucleosidase, putative [Ricinus communis]
5 Hb_000956_030 0.0746441816 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
6 Hb_000103_180 0.0751292121 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
7 Hb_022250_130 0.0763346719 - - inositol hexaphosphate kinase, putative [Ricinus communis]
8 Hb_123475_010 0.0766863468 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
9 Hb_000057_200 0.0776809608 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
10 Hb_004223_090 0.0780468498 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
11 Hb_033642_010 0.0782189159 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
12 Hb_002811_360 0.078578347 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
13 Hb_006332_010 0.0794307006 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
14 Hb_001489_150 0.0800794281 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
15 Hb_002030_030 0.0821504844 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
16 Hb_012305_050 0.0822194557 - - unnamed protein product [Coffea canephora]
17 Hb_012799_130 0.0823137494 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
18 Hb_000363_500 0.0829596626 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
19 Hb_000321_070 0.08345659 - - protein with unknown function [Ricinus communis]
20 Hb_144598_030 0.0841454675 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]

Gene co-expression network

sample Hb_185830_020 Hb_185830_020 Hb_003847_080 Hb_003847_080 Hb_185830_020--Hb_003847_080 Hb_010691_060 Hb_010691_060 Hb_185830_020--Hb_010691_060 Hb_002982_040 Hb_002982_040 Hb_185830_020--Hb_002982_040 Hb_000956_030 Hb_000956_030 Hb_185830_020--Hb_000956_030 Hb_000103_180 Hb_000103_180 Hb_185830_020--Hb_000103_180 Hb_022250_130 Hb_022250_130 Hb_185830_020--Hb_022250_130 Hb_012305_050 Hb_012305_050 Hb_003847_080--Hb_012305_050 Hb_004128_190 Hb_004128_190 Hb_003847_080--Hb_004128_190 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_002078_150 Hb_002078_150 Hb_003847_080--Hb_002078_150 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_001766_150 Hb_001766_150 Hb_010691_060--Hb_001766_150 Hb_000157_030 Hb_000157_030 Hb_010691_060--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_010691_060--Hb_003266_050 Hb_002391_300 Hb_002391_300 Hb_010691_060--Hb_002391_300 Hb_003058_130 Hb_003058_130 Hb_010691_060--Hb_003058_130 Hb_000031_220 Hb_000031_220 Hb_002982_040--Hb_000031_220 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_187739_020 Hb_187739_020 Hb_002982_040--Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_002982_040--Hb_000866_030 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160 Hb_004198_010 Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_000956_030--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_007426_030 Hb_007426_030 Hb_000103_180--Hb_007426_030 Hb_002079_010 Hb_002079_010 Hb_000103_180--Hb_002079_010 Hb_004724_200 Hb_004724_200 Hb_000103_180--Hb_004724_200 Hb_004109_090 Hb_004109_090 Hb_000103_180--Hb_004109_090 Hb_002811_360 Hb_002811_360 Hb_000103_180--Hb_002811_360 Hb_000483_200 Hb_000483_200 Hb_000103_180--Hb_000483_200 Hb_022250_130--Hb_012305_050 Hb_022250_130--Hb_000103_180 Hb_022250_130--Hb_003847_080 Hb_006332_010 Hb_006332_010 Hb_022250_130--Hb_006332_010 Hb_022250_130--Hb_010691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2614 11.8452 8.40466 14.5245 24.6103 41.7076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.5557 20.9405 18.4944 18.3111 6.67078

CAGE analysis