Hb_063716_080

Information

Type -
Description -
Location Contig63716: 76155-77717
Sequence    

Annotation

kegg
ID rcu:RCOM_1676960
description DNA-directed RNA polymerase III subunit F, putative
nr
ID XP_002509507.1
description DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
swissprot
ID Q2T9S3
description DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1
trembl
ID B9RBH3
description DNA-directed RNA polymerase III subunit F, putative OS=Ricinus communis GN=RCOM_1676960 PE=4 SV=1
Gene Ontology
ID GO:0009507
description dna-directed rna polymerase iii subunit rpc6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51981: 76189-76388 , PASA_asmbl_51983: 76952-77315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063716_080 0.0 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
2 Hb_003641_060 0.0661515071 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
3 Hb_002960_160 0.0671896795 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
4 Hb_002255_030 0.0691484661 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
5 Hb_012180_050 0.0753930557 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
6 Hb_080313_010 0.0766608753 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
7 Hb_003935_030 0.0784601882 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
8 Hb_003299_070 0.0794737298 - - AMP deaminase [Theobroma cacao]
9 Hb_164010_060 0.0820948336 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
10 Hb_008159_020 0.0836921306 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
11 Hb_005494_020 0.084710861 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
12 Hb_000768_110 0.0866801737 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
13 Hb_017491_030 0.0871718467 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
14 Hb_185679_010 0.0883908518 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
15 Hb_002163_010 0.0891658445 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
16 Hb_000796_190 0.0903258018 - - hypothetical protein F383_31148 [Gossypium arboreum]
17 Hb_004881_020 0.0903474605 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
18 Hb_000179_030 0.0924968498 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
19 Hb_000567_010 0.0925552607 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
20 Hb_002044_060 0.0936569958 - - elongation factor ts, putative [Ricinus communis]

Gene co-expression network

sample Hb_063716_080 Hb_063716_080 Hb_003641_060 Hb_003641_060 Hb_063716_080--Hb_003641_060 Hb_002960_160 Hb_002960_160 Hb_063716_080--Hb_002960_160 Hb_002255_030 Hb_002255_030 Hb_063716_080--Hb_002255_030 Hb_012180_050 Hb_012180_050 Hb_063716_080--Hb_012180_050 Hb_080313_010 Hb_080313_010 Hb_063716_080--Hb_080313_010 Hb_003935_030 Hb_003935_030 Hb_063716_080--Hb_003935_030 Hb_000785_080 Hb_000785_080 Hb_003641_060--Hb_000785_080 Hb_004881_020 Hb_004881_020 Hb_003641_060--Hb_004881_020 Hb_003641_060--Hb_002255_030 Hb_010931_040 Hb_010931_040 Hb_003641_060--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_003641_060--Hb_187739_020 Hb_005494_020 Hb_005494_020 Hb_002960_160--Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_002960_160--Hb_000567_010 Hb_000796_190 Hb_000796_190 Hb_002960_160--Hb_000796_190 Hb_000743_040 Hb_000743_040 Hb_002960_160--Hb_000743_040 Hb_002044_060 Hb_002044_060 Hb_002960_160--Hb_002044_060 Hb_000023_330 Hb_000023_330 Hb_002255_030--Hb_000023_330 Hb_003680_150 Hb_003680_150 Hb_002255_030--Hb_003680_150 Hb_000347_180 Hb_000347_180 Hb_002255_030--Hb_000347_180 Hb_002045_240 Hb_002045_240 Hb_002255_030--Hb_002045_240 Hb_000574_540 Hb_000574_540 Hb_002255_030--Hb_000574_540 Hb_000136_090 Hb_000136_090 Hb_012180_050--Hb_000136_090 Hb_012180_050--Hb_002960_160 Hb_000158_130 Hb_000158_130 Hb_012180_050--Hb_000158_130 Hb_000098_130 Hb_000098_130 Hb_012180_050--Hb_000098_130 Hb_012180_050--Hb_000796_190 Hb_012023_020 Hb_012023_020 Hb_080313_010--Hb_012023_020 Hb_001140_350 Hb_001140_350 Hb_080313_010--Hb_001140_350 Hb_005503_040 Hb_005503_040 Hb_080313_010--Hb_005503_040 Hb_003747_010 Hb_003747_010 Hb_080313_010--Hb_003747_010 Hb_001454_320 Hb_001454_320 Hb_080313_010--Hb_001454_320 Hb_003935_030--Hb_005494_020 Hb_003299_070 Hb_003299_070 Hb_003935_030--Hb_003299_070 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9086 12.5346 5.11234 8.06968 10.7966 16.8093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.9763 7.67584 4.15204 8.51719 4.31889

CAGE analysis