Hb_012023_020

Information

Type -
Description -
Location Contig12023: 16653-21231
Sequence    

Annotation

kegg
ID rcu:RCOM_1419880
description 1-acyl-sn-glycerol-3-phosphate acyltransferase zeta precursor, putative
nr
ID KDP42013.1
description hypothetical protein JCGZ_03076 [Jatropha curcas]
swissprot
ID Q8C0N2
description Glycerol-3-phosphate acyltransferase 3 OS=Mus musculus GN=Agpat9 PE=1 SV=1
trembl
ID A0A067L437
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03076 PE=4 SV=1
Gene Ontology
ID GO:0005783
description glycerol-3-phosphate acyltransferase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06291: 11160-21209
cDNA
(Sanger)
(ID:Location)		 050_E12.ab1: 17958-21209

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012023_020 0.0 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
2 Hb_080313_010 0.0584427086 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
3 Hb_002067_120 0.076351969 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
4 Hb_001140_350 0.0828667925 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
5 Hb_000645_120 0.0831083995 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
6 Hb_010931_040 0.0835863721 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
7 Hb_126295_010 0.0853453776 - - PREDICTED: protein SEH1 [Jatropha curcas]
8 Hb_000648_100 0.0861284345 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
9 Hb_002304_090 0.0865252923 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
10 Hb_001488_410 0.0869364112 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_001541_090 0.0880452778 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_003549_090 0.0881023097 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
13 Hb_001085_320 0.0898337001 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
14 Hb_003124_130 0.0917512952 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
15 Hb_015763_030 0.093466097 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000600_070 0.0936969649 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
17 Hb_008864_110 0.095582999 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
18 Hb_030131_040 0.0959666345 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
19 Hb_001454_320 0.096096551 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
20 Hb_000160_220 0.0965267271 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012023_020 Hb_012023_020 Hb_080313_010 Hb_080313_010 Hb_012023_020--Hb_080313_010 Hb_002067_120 Hb_002067_120 Hb_012023_020--Hb_002067_120 Hb_001140_350 Hb_001140_350 Hb_012023_020--Hb_001140_350 Hb_000645_120 Hb_000645_120 Hb_012023_020--Hb_000645_120 Hb_010931_040 Hb_010931_040 Hb_012023_020--Hb_010931_040 Hb_126295_010 Hb_126295_010 Hb_012023_020--Hb_126295_010 Hb_080313_010--Hb_001140_350 Hb_005503_040 Hb_005503_040 Hb_080313_010--Hb_005503_040 Hb_063716_080 Hb_063716_080 Hb_080313_010--Hb_063716_080 Hb_003747_010 Hb_003747_010 Hb_080313_010--Hb_003747_010 Hb_001454_320 Hb_001454_320 Hb_080313_010--Hb_001454_320 Hb_010565_010 Hb_010565_010 Hb_002067_120--Hb_010565_010 Hb_006951_020 Hb_006951_020 Hb_002067_120--Hb_006951_020 Hb_000107_200 Hb_000107_200 Hb_002067_120--Hb_000107_200 Hb_002067_120--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_002067_120--Hb_000606_080 Hb_001454_280 Hb_001454_280 Hb_001140_350--Hb_001454_280 Hb_001140_350--Hb_000645_120 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_000510_310 Hb_000510_310 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_003464_020 Hb_003464_020 Hb_010931_040--Hb_003464_020 Hb_002235_160 Hb_002235_160 Hb_010931_040--Hb_002235_160 Hb_002044_060 Hb_002044_060 Hb_010931_040--Hb_002044_060 Hb_001085_320 Hb_001085_320 Hb_010931_040--Hb_001085_320 Hb_000023_190 Hb_000023_190 Hb_010931_040--Hb_000023_190 Hb_000567_050 Hb_000567_050 Hb_010931_040--Hb_000567_050 Hb_019053_020 Hb_019053_020 Hb_126295_010--Hb_019053_020 Hb_003549_090 Hb_003549_090 Hb_126295_010--Hb_003549_090 Hb_001541_090 Hb_001541_090 Hb_126295_010--Hb_001541_090 Hb_000025_050 Hb_000025_050 Hb_126295_010--Hb_000025_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.2002 42.1916 29.4038 56.3881 63.0506 94.7671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.538 23.8147 29.3871 39.2862 18.7756

CAGE analysis