Hb_126295_010

Information

Type -
Description -
Location Contig126295: 1248-5020
Sequence    

Annotation

kegg
ID rcu:RCOM_1691290
description nucleotide binding protein, putative
nr
ID XP_012086752.1
description PREDICTED: protein SEH1 [Jatropha curcas]
swissprot
ID Q93VR9
description Protein SEH1 OS=Arabidopsis thaliana GN=SEH1 PE=1 SV=1
trembl
ID B9RCQ3
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_1691290 PE=4 SV=1
Gene Ontology
ID GO:0005635
description nucleotide binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07961: 3753-4850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126295_010 0.0 - - PREDICTED: protein SEH1 [Jatropha curcas]
2 Hb_012023_020 0.0853453776 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
3 Hb_002067_120 0.0866782738 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
4 Hb_019053_020 0.105003935 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
5 Hb_003549_090 0.1159936355 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
6 Hb_001541_090 0.1181502715 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_000025_050 0.1181843768 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
8 Hb_000606_080 0.1190977573 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
9 Hb_000959_250 0.119198117 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
10 Hb_003050_370 0.1205812592 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
11 Hb_000991_070 0.125336516 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
12 Hb_073973_160 0.1259482321 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_006951_020 0.1262778852 - - Rop3 [Hevea brasiliensis]
14 Hb_000592_080 0.1290786475 - - PREDICTED: thymidylate kinase [Jatropha curcas]
15 Hb_010565_010 0.1293111487 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
16 Hb_148079_010 0.131562426 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
17 Hb_058999_030 0.1316273154 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
18 Hb_034506_010 0.1320740858 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
19 Hb_002320_070 0.1322106897 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000755_030 0.1322869261 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]

Gene co-expression network

sample Hb_126295_010 Hb_126295_010 Hb_012023_020 Hb_012023_020 Hb_126295_010--Hb_012023_020 Hb_002067_120 Hb_002067_120 Hb_126295_010--Hb_002067_120 Hb_019053_020 Hb_019053_020 Hb_126295_010--Hb_019053_020 Hb_003549_090 Hb_003549_090 Hb_126295_010--Hb_003549_090 Hb_001541_090 Hb_001541_090 Hb_126295_010--Hb_001541_090 Hb_000025_050 Hb_000025_050 Hb_126295_010--Hb_000025_050 Hb_080313_010 Hb_080313_010 Hb_012023_020--Hb_080313_010 Hb_012023_020--Hb_002067_120 Hb_001140_350 Hb_001140_350 Hb_012023_020--Hb_001140_350 Hb_000645_120 Hb_000645_120 Hb_012023_020--Hb_000645_120 Hb_010931_040 Hb_010931_040 Hb_012023_020--Hb_010931_040 Hb_010565_010 Hb_010565_010 Hb_002067_120--Hb_010565_010 Hb_006951_020 Hb_006951_020 Hb_002067_120--Hb_006951_020 Hb_000107_200 Hb_000107_200 Hb_002067_120--Hb_000107_200 Hb_000606_080 Hb_000606_080 Hb_002067_120--Hb_000606_080 Hb_148079_010 Hb_148079_010 Hb_019053_020--Hb_148079_010 Hb_019053_020--Hb_001541_090 Hb_019053_020--Hb_012023_020 Hb_103760_010 Hb_103760_010 Hb_019053_020--Hb_103760_010 Hb_001488_410 Hb_001488_410 Hb_019053_020--Hb_001488_410 Hb_002398_030 Hb_002398_030 Hb_003549_090--Hb_002398_030 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_002273_130 Hb_002273_130 Hb_001541_090--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_001541_090--Hb_001341_120 Hb_030131_040 Hb_030131_040 Hb_001541_090--Hb_030131_040 Hb_008103_040 Hb_008103_040 Hb_001541_090--Hb_008103_040 Hb_001541_090--Hb_001488_410 Hb_003464_020 Hb_003464_020 Hb_001541_090--Hb_003464_020 Hb_076874_010 Hb_076874_010 Hb_000025_050--Hb_076874_010 Hb_106411_010 Hb_106411_010 Hb_000025_050--Hb_106411_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_011671_090 Hb_011671_090 Hb_000025_050--Hb_011671_090 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_003925_070 Hb_003925_070 Hb_000025_050--Hb_003925_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8764 8.59454 9.57289 16.2227 14.1634 25.6893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.14743 5.35934 7.3354 6.51841 2.84662

CAGE analysis