Hb_019053_020

Information

Type -
Description -
Location Contig19053: 16562-17276
Sequence    

Annotation

kegg
ID pvu:PHAVU_004G0542001
description hypothetical protein
nr
ID EYU45405.1
description hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022S2B2
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0105441mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description sulfite oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18996: 15991-29221
cDNA
(Sanger)
(ID:Location)		 012_I21.ab1: 15991-24316 , 030_J13.ab1: 15991-24282 , 035_G01.ab1: 16004-23691

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019053_020 0.0 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
2 Hb_148079_010 0.0926178258 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
3 Hb_001541_090 0.0972642417 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_012023_020 0.0992535297 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
5 Hb_103760_010 0.1001311934 - - serine/arginine rich splicing factor, putative [Ricinus communis]
6 Hb_126295_010 0.105003935 - - PREDICTED: protein SEH1 [Jatropha curcas]
7 Hb_001488_410 0.1086263198 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
8 Hb_002903_080 0.1089325529 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
9 Hb_001454_380 0.1133126661 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
10 Hb_001675_070 0.1146992179 - - eukaryotic translation elongation factor, putative [Ricinus communis]
11 Hb_008103_040 0.1160897649 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
12 Hb_058702_010 0.1209118654 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
13 Hb_010931_040 0.1212146554 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
14 Hb_000648_100 0.1238197018 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
15 Hb_004096_100 0.1245063364 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
16 Hb_003050_370 0.1261460267 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
17 Hb_001025_080 0.1265828672 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
18 Hb_000208_210 0.1270439183 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
19 Hb_006478_060 0.1277227724 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
20 Hb_007026_040 0.127767793 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_019053_020 Hb_019053_020 Hb_148079_010 Hb_148079_010 Hb_019053_020--Hb_148079_010 Hb_001541_090 Hb_001541_090 Hb_019053_020--Hb_001541_090 Hb_012023_020 Hb_012023_020 Hb_019053_020--Hb_012023_020 Hb_103760_010 Hb_103760_010 Hb_019053_020--Hb_103760_010 Hb_126295_010 Hb_126295_010 Hb_019053_020--Hb_126295_010 Hb_001488_410 Hb_001488_410 Hb_019053_020--Hb_001488_410 Hb_148079_010--Hb_103760_010 Hb_005147_060 Hb_005147_060 Hb_148079_010--Hb_005147_060 Hb_007026_040 Hb_007026_040 Hb_148079_010--Hb_007026_040 Hb_148079_010--Hb_126295_010 Hb_004732_020 Hb_004732_020 Hb_148079_010--Hb_004732_020 Hb_002273_130 Hb_002273_130 Hb_001541_090--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_001541_090--Hb_001341_120 Hb_030131_040 Hb_030131_040 Hb_001541_090--Hb_030131_040 Hb_008103_040 Hb_008103_040 Hb_001541_090--Hb_008103_040 Hb_001541_090--Hb_001488_410 Hb_003464_020 Hb_003464_020 Hb_001541_090--Hb_003464_020 Hb_080313_010 Hb_080313_010 Hb_012023_020--Hb_080313_010 Hb_002067_120 Hb_002067_120 Hb_012023_020--Hb_002067_120 Hb_001140_350 Hb_001140_350 Hb_012023_020--Hb_001140_350 Hb_000645_120 Hb_000645_120 Hb_012023_020--Hb_000645_120 Hb_010931_040 Hb_010931_040 Hb_012023_020--Hb_010931_040 Hb_012023_020--Hb_126295_010 Hb_000083_160 Hb_000083_160 Hb_103760_010--Hb_000083_160 Hb_103760_010--Hb_001488_410 Hb_103760_010--Hb_007026_040 Hb_003010_020 Hb_003010_020 Hb_103760_010--Hb_003010_020 Hb_000208_210 Hb_000208_210 Hb_103760_010--Hb_000208_210 Hb_001617_060 Hb_001617_060 Hb_103760_010--Hb_001617_060 Hb_126295_010--Hb_002067_120 Hb_003549_090 Hb_003549_090 Hb_126295_010--Hb_003549_090 Hb_126295_010--Hb_001541_090 Hb_000025_050 Hb_000025_050 Hb_126295_010--Hb_000025_050 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6124 9.9764 11.3162 18.7801 23.6311 39.4405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.12477 8.70557 7.76326 18.1112 5.2294

CAGE analysis