Hb_011671_090

Information

Type -
Description -
Location Contig11671: 95332-101233
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00830g
description hypothetical protein
nr
ID XP_012090462.1
description PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q54IV7
description Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1
trembl
ID A0A067JEV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26272 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein rft1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05134: 96332-97116 , PASA_asmbl_05135: 99304-99705 , PASA_asmbl_05136: 100245-100881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_090 0.0 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
2 Hb_030131_040 0.0921795626 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
3 Hb_000526_050 0.09850328 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
4 Hb_001341_120 0.1023391733 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
5 Hb_000009_650 0.1028358474 - - PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Jatropha curcas]
6 Hb_156825_010 0.10817467 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
7 Hb_000025_050 0.1091233305 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
8 Hb_002671_100 0.1099994892 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
9 Hb_000085_150 0.1100622257 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
10 Hb_002273_130 0.1120081175 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
11 Hb_001541_090 0.1131115781 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000076_270 0.1154212526 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
13 Hb_002783_170 0.1159601188 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
14 Hb_000866_470 0.117297421 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
15 Hb_000915_110 0.1178058182 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
16 Hb_009222_010 0.1195210218 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_007594_130 0.11954655 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
18 Hb_040262_010 0.1200660514 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
19 Hb_004881_020 0.1201195532 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
20 Hb_003363_120 0.1217874597 - - GTP-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_011671_090 Hb_011671_090 Hb_030131_040 Hb_030131_040 Hb_011671_090--Hb_030131_040 Hb_000526_050 Hb_000526_050 Hb_011671_090--Hb_000526_050 Hb_001341_120 Hb_001341_120 Hb_011671_090--Hb_001341_120 Hb_000009_650 Hb_000009_650 Hb_011671_090--Hb_000009_650 Hb_156825_010 Hb_156825_010 Hb_011671_090--Hb_156825_010 Hb_000025_050 Hb_000025_050 Hb_011671_090--Hb_000025_050 Hb_002273_130 Hb_002273_130 Hb_030131_040--Hb_002273_130 Hb_030131_040--Hb_001341_120 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_000913_050 Hb_000913_050 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_001541_090 Hb_001541_090 Hb_030131_040--Hb_001541_090 Hb_001579_320 Hb_001579_320 Hb_000526_050--Hb_001579_320 Hb_005098_010 Hb_005098_010 Hb_000526_050--Hb_005098_010 Hb_007594_130 Hb_007594_130 Hb_000526_050--Hb_007594_130 Hb_040262_010 Hb_040262_010 Hb_000526_050--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_000526_050--Hb_004881_020 Hb_003375_070 Hb_003375_070 Hb_000526_050--Hb_003375_070 Hb_000076_270 Hb_000076_270 Hb_001341_120--Hb_000076_270 Hb_001341_120--Hb_002273_130 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_001341_120--Hb_000913_050 Hb_002737_070 Hb_002737_070 Hb_000009_650--Hb_002737_070 Hb_002918_030 Hb_002918_030 Hb_000009_650--Hb_002918_030 Hb_000062_430 Hb_000062_430 Hb_000009_650--Hb_000062_430 Hb_001433_070 Hb_001433_070 Hb_000009_650--Hb_001433_070 Hb_000009_650--Hb_000913_050 Hb_001380_020 Hb_001380_020 Hb_156825_010--Hb_001380_020 Hb_007086_010 Hb_007086_010 Hb_156825_010--Hb_007086_010 Hb_003688_130 Hb_003688_130 Hb_156825_010--Hb_003688_130 Hb_156825_010--Hb_030131_040 Hb_001123_030 Hb_001123_030 Hb_156825_010--Hb_001123_030 Hb_076874_010 Hb_076874_010 Hb_000025_050--Hb_076874_010 Hb_106411_010 Hb_106411_010 Hb_000025_050--Hb_106411_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_003925_070 Hb_003925_070 Hb_000025_050--Hb_003925_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48035 1.00102 1.63956 2.05151 2.86161 3.33436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69044 1.75742 0.491359 1.0992 1.04463

CAGE analysis