Hb_156825_010

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig156825: 242-592
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08080g
description hypothetical protein
nr
ID KDP38897.1
description hypothetical protein JCGZ_05054 [Jatropha curcas]
swissprot
ID Q5PP38
description GATA transcription factor 27 OS=Arabidopsis thaliana GN=GATA27 PE=2 SV=1
trembl
ID A0A067KRY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05054 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156825_010 0.0 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
2 Hb_001380_020 0.0845627062 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
3 Hb_007086_010 0.0960454263 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
4 Hb_011671_090 0.10817467 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
5 Hb_003688_130 0.1144127701 - - phosphoserine phosphatase, putative [Ricinus communis]
6 Hb_030131_040 0.120377609 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
7 Hb_001123_030 0.1209920736 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_004881_020 0.1239137821 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
9 Hb_001025_110 0.1239172543 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007594_130 0.1242482434 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
11 Hb_003641_060 0.1250242638 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
12 Hb_004934_070 0.1259903843 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
13 Hb_000106_130 0.1262562839 - - unnamed protein product [Vitis vinifera]
14 Hb_009111_040 0.1263997223 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
15 Hb_012325_030 0.1268751337 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002671_100 0.1279071249 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
17 Hb_003050_370 0.1292207786 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
18 Hb_000261_110 0.1297346218 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
19 Hb_002273_130 0.1301826188 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
20 Hb_003363_120 0.1302865193 - - GTP-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_156825_010 Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_156825_010--Hb_001380_020 Hb_007086_010 Hb_007086_010 Hb_156825_010--Hb_007086_010 Hb_011671_090 Hb_011671_090 Hb_156825_010--Hb_011671_090 Hb_003688_130 Hb_003688_130 Hb_156825_010--Hb_003688_130 Hb_030131_040 Hb_030131_040 Hb_156825_010--Hb_030131_040 Hb_001123_030 Hb_001123_030 Hb_156825_010--Hb_001123_030 Hb_001158_220 Hb_001158_220 Hb_001380_020--Hb_001158_220 Hb_070739_010 Hb_070739_010 Hb_001380_020--Hb_070739_010 Hb_001380_020--Hb_007086_010 Hb_002495_040 Hb_002495_040 Hb_001380_020--Hb_002495_040 Hb_007594_130 Hb_007594_130 Hb_001380_020--Hb_007594_130 Hb_030385_010 Hb_030385_010 Hb_007086_010--Hb_030385_010 Hb_001009_040 Hb_001009_040 Hb_007086_010--Hb_001009_040 Hb_005389_150 Hb_005389_150 Hb_007086_010--Hb_005389_150 Hb_000270_630 Hb_000270_630 Hb_007086_010--Hb_000270_630 Hb_011671_090--Hb_030131_040 Hb_000526_050 Hb_000526_050 Hb_011671_090--Hb_000526_050 Hb_001341_120 Hb_001341_120 Hb_011671_090--Hb_001341_120 Hb_000009_650 Hb_000009_650 Hb_011671_090--Hb_000009_650 Hb_000025_050 Hb_000025_050 Hb_011671_090--Hb_000025_050 Hb_054865_120 Hb_054865_120 Hb_003688_130--Hb_054865_120 Hb_005288_190 Hb_005288_190 Hb_003688_130--Hb_005288_190 Hb_003688_130--Hb_002495_040 Hb_000025_470 Hb_000025_470 Hb_003688_130--Hb_000025_470 Hb_001579_270 Hb_001579_270 Hb_003688_130--Hb_001579_270 Hb_008748_040 Hb_008748_040 Hb_003688_130--Hb_008748_040 Hb_002273_130 Hb_002273_130 Hb_030131_040--Hb_002273_130 Hb_030131_040--Hb_001341_120 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_000913_050 Hb_000913_050 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_001541_090 Hb_001541_090 Hb_030131_040--Hb_001541_090 Hb_000302_310 Hb_000302_310 Hb_001123_030--Hb_000302_310 Hb_000261_230 Hb_000261_230 Hb_001123_030--Hb_000261_230 Hb_001214_060 Hb_001214_060 Hb_001123_030--Hb_001214_060 Hb_011909_120 Hb_011909_120 Hb_001123_030--Hb_011909_120 Hb_000126_010 Hb_000126_010 Hb_001123_030--Hb_000126_010 Hb_022181_030 Hb_022181_030 Hb_001123_030--Hb_022181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2517 10.9707 15.8741 18.2688 21.9953 31.4071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.54 11.8426 3.43266 11.3984 6.82551

CAGE analysis