Hb_030385_010

Information

Type -
Description -
Location Contig30385: 28046-42159
Sequence    

Annotation

kegg
ID rcu:RCOM_0813710
description alcohol dehydrogenase, putative (EC:1.1.1.141 1.6.5.5)
nr
ID XP_012066888.1
description PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
swissprot
ID Q8BGC4
description Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=1 SV=1
trembl
ID B9RYJ6
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0813710 PE=4 SV=1
Gene Ontology
ID GO:0003960
description zinc-binding alcohol dehydrogenase domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32063: 29138-42117 , PASA_asmbl_32064: 28128-32083
cDNA
(Sanger)
(ID:Location)		 004_K08.ab1: 28130-31721

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030385_010 0.0 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
2 Hb_001541_230 0.0822644646 - - unnamed protein product [Vitis vinifera]
3 Hb_007086_010 0.0847513263 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
4 Hb_004577_020 0.0863619771 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
5 Hb_010417_080 0.0977894393 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
6 Hb_000207_120 0.0979126828 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
7 Hb_106724_020 0.0995538083 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
8 Hb_000853_350 0.100852475 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
9 Hb_004586_180 0.1011662536 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
10 Hb_011609_080 0.104974764 - - uv excision repair protein rad23, putative [Ricinus communis]
11 Hb_000086_380 0.1054895769 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
12 Hb_164010_060 0.108850557 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
13 Hb_005539_030 0.1092097651 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
14 Hb_007594_130 0.1099862502 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
15 Hb_001936_020 0.111696676 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
16 Hb_001946_010 0.11193997 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_001486_340 0.1124502489 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
18 Hb_004881_020 0.1126460593 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
19 Hb_003813_130 0.1131954078 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
20 Hb_000347_280 0.1134038344 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]

Gene co-expression network

sample Hb_030385_010 Hb_030385_010 Hb_001541_230 Hb_001541_230 Hb_030385_010--Hb_001541_230 Hb_007086_010 Hb_007086_010 Hb_030385_010--Hb_007086_010 Hb_004577_020 Hb_004577_020 Hb_030385_010--Hb_004577_020 Hb_010417_080 Hb_010417_080 Hb_030385_010--Hb_010417_080 Hb_000207_120 Hb_000207_120 Hb_030385_010--Hb_000207_120 Hb_106724_020 Hb_106724_020 Hb_030385_010--Hb_106724_020 Hb_000000_270 Hb_000000_270 Hb_001541_230--Hb_000000_270 Hb_000227_090 Hb_000227_090 Hb_001541_230--Hb_000227_090 Hb_006816_050 Hb_006816_050 Hb_001541_230--Hb_006816_050 Hb_005503_040 Hb_005503_040 Hb_001541_230--Hb_005503_040 Hb_000011_190 Hb_000011_190 Hb_001541_230--Hb_000011_190 Hb_156825_010 Hb_156825_010 Hb_007086_010--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_007086_010--Hb_001380_020 Hb_001009_040 Hb_001009_040 Hb_007086_010--Hb_001009_040 Hb_005389_150 Hb_005389_150 Hb_007086_010--Hb_005389_150 Hb_000270_630 Hb_000270_630 Hb_007086_010--Hb_000270_630 Hb_011671_430 Hb_011671_430 Hb_004577_020--Hb_011671_430 Hb_004577_020--Hb_010417_080 Hb_000853_350 Hb_000853_350 Hb_004577_020--Hb_000853_350 Hb_001936_020 Hb_001936_020 Hb_004577_020--Hb_001936_020 Hb_000853_170 Hb_000853_170 Hb_004577_020--Hb_000853_170 Hb_003952_070 Hb_003952_070 Hb_004577_020--Hb_003952_070 Hb_001221_100 Hb_001221_100 Hb_010417_080--Hb_001221_100 Hb_005064_060 Hb_005064_060 Hb_010417_080--Hb_005064_060 Hb_004046_050 Hb_004046_050 Hb_010417_080--Hb_004046_050 Hb_011218_040 Hb_011218_040 Hb_010417_080--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_010417_080--Hb_039946_020 Hb_003693_070 Hb_003693_070 Hb_000207_120--Hb_003693_070 Hb_002946_160 Hb_002946_160 Hb_000207_120--Hb_002946_160 Hb_033594_030 Hb_033594_030 Hb_000207_120--Hb_033594_030 Hb_000207_120--Hb_106724_020 Hb_000808_280 Hb_000808_280 Hb_000207_120--Hb_000808_280 Hb_000630_050 Hb_000630_050 Hb_106724_020--Hb_000630_050 Hb_003813_130 Hb_003813_130 Hb_106724_020--Hb_003813_130 Hb_004055_030 Hb_004055_030 Hb_106724_020--Hb_004055_030 Hb_001102_140 Hb_001102_140 Hb_106724_020--Hb_001102_140 Hb_106724_020--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_106724_020--Hb_001454_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9961 12.9994 8.01844 13.209 19.255 18.7985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0778 11.7495 6.86467 15.8681 5.55958

CAGE analysis