Hb_000270_630

Information

Type transcription factor
Description TF Family: LIM
Location Contig270: 513077-517063
Sequence    

Annotation

kegg
ID rcu:RCOM_1511990
description Pollen-specific protein SF3, putative
nr
ID XP_012080123.1
description PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
swissprot
ID Q94JX5
description LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1
trembl
ID A0A067KFV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11516 PE=4 SV=1
Gene Ontology
ID GO:0008270
description lim domain-containing protein wlim1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28245: 513111-516553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_630 0.0 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
2 Hb_000523_050 0.0733710419 - - microsomal glutathione s-transferase, putative [Ricinus communis]
3 Hb_002946_160 0.0830505375 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
4 Hb_000009_480 0.0840119689 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
5 Hb_103012_010 0.0851230261 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
6 Hb_003813_130 0.0856315387 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
7 Hb_040262_010 0.088367695 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
8 Hb_000395_020 0.089203182 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
9 Hb_001341_120 0.0900213693 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
10 Hb_000351_120 0.0901447077 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
11 Hb_002309_010 0.0918085367 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
12 Hb_001960_020 0.0926435005 - - PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
13 Hb_000538_100 0.0940591553 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011174_090 0.095087297 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
15 Hb_001172_010 0.0970571642 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
16 Hb_001946_010 0.0972898448 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_006827_020 0.0976192489 - - conserved hypothetical protein [Ricinus communis]
18 Hb_033834_060 0.0978128778 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
19 Hb_002671_100 0.0993977424 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
20 Hb_000868_060 0.0996676291 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_630 Hb_000270_630 Hb_000523_050 Hb_000523_050 Hb_000270_630--Hb_000523_050 Hb_002946_160 Hb_002946_160 Hb_000270_630--Hb_002946_160 Hb_000009_480 Hb_000009_480 Hb_000270_630--Hb_000009_480 Hb_103012_010 Hb_103012_010 Hb_000270_630--Hb_103012_010 Hb_003813_130 Hb_003813_130 Hb_000270_630--Hb_003813_130 Hb_040262_010 Hb_040262_010 Hb_000270_630--Hb_040262_010 Hb_002078_020 Hb_002078_020 Hb_000523_050--Hb_002078_020 Hb_000395_020 Hb_000395_020 Hb_000523_050--Hb_000395_020 Hb_000523_050--Hb_003813_130 Hb_011930_160 Hb_011930_160 Hb_000523_050--Hb_011930_160 Hb_000538_100 Hb_000538_100 Hb_000523_050--Hb_000538_100 Hb_030116_020 Hb_030116_020 Hb_002946_160--Hb_030116_020 Hb_000367_010 Hb_000367_010 Hb_002946_160--Hb_000367_010 Hb_007904_160 Hb_007904_160 Hb_002946_160--Hb_007904_160 Hb_000109_210 Hb_000109_210 Hb_002946_160--Hb_000109_210 Hb_000983_150 Hb_000983_150 Hb_002946_160--Hb_000983_150 Hb_000868_060 Hb_000868_060 Hb_000009_480--Hb_000868_060 Hb_003858_040 Hb_003858_040 Hb_000009_480--Hb_003858_040 Hb_080313_010 Hb_080313_010 Hb_000009_480--Hb_080313_010 Hb_003747_010 Hb_003747_010 Hb_000009_480--Hb_003747_010 Hb_001140_350 Hb_001140_350 Hb_000009_480--Hb_001140_350 Hb_001946_010 Hb_001946_010 Hb_103012_010--Hb_001946_010 Hb_000260_170 Hb_000260_170 Hb_103012_010--Hb_000260_170 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240 Hb_006827_020 Hb_006827_020 Hb_003813_130--Hb_006827_020 Hb_003813_130--Hb_011930_160 Hb_003813_130--Hb_103012_010 Hb_003813_130--Hb_001946_010 Hb_004055_030 Hb_004055_030 Hb_003813_130--Hb_004055_030 Hb_002671_100 Hb_002671_100 Hb_040262_010--Hb_002671_100 Hb_040262_010--Hb_103012_010 Hb_040262_010--Hb_001946_010 Hb_040262_010--Hb_007317_110 Hb_040262_010--Hb_000260_170 Hb_007594_130 Hb_007594_130 Hb_040262_010--Hb_007594_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2845 11.3318 19.0791 20.7973 31.377 33.4934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0541 14.5185 13.1076 23.9208 6.80558

CAGE analysis