Hb_000000_270

Information

Type -
Description -
Location Contig0: 487774-488931
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13410g
description POPTRDRAFT_551914; zinc finger family protein
nr
ID XP_012071773.1
description PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
swissprot
ID Q91YT2
description E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2 SV=1
trembl
ID A0A067L1U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04385 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rnf185 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00067: 488611-489129 , PASA_asmbl_00068: 487775-489470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_270 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
2 Hb_000366_120 0.0768560139 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
3 Hb_000982_060 0.0790442509 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
4 Hb_000562_090 0.0823611415 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
5 Hb_001541_230 0.084103267 - - unnamed protein product [Vitis vinifera]
6 Hb_028962_020 0.0841594246 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
7 Hb_000886_050 0.0848694424 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
8 Hb_000479_220 0.0856732926 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
9 Hb_000574_540 0.0867213983 - - ATP binding protein, putative [Ricinus communis]
10 Hb_014497_050 0.0871461884 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
11 Hb_000227_090 0.0885281633 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
12 Hb_008511_090 0.0894290129 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
13 Hb_000291_060 0.09029964 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
14 Hb_000441_140 0.0910796394 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
15 Hb_000120_170 0.0921953269 - - selenoprotein [Populus trichocarpa]
16 Hb_002078_220 0.0923460313 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_000030_190 0.0931084687 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
18 Hb_000696_090 0.0956615905 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
19 Hb_005489_080 0.0959833104 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010485_020 0.0961188334 - - PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_270 Hb_000000_270 Hb_000366_120 Hb_000366_120 Hb_000000_270--Hb_000366_120 Hb_000982_060 Hb_000982_060 Hb_000000_270--Hb_000982_060 Hb_000562_090 Hb_000562_090 Hb_000000_270--Hb_000562_090 Hb_001541_230 Hb_001541_230 Hb_000000_270--Hb_001541_230 Hb_028962_020 Hb_028962_020 Hb_000000_270--Hb_028962_020 Hb_000886_050 Hb_000886_050 Hb_000000_270--Hb_000886_050 Hb_007576_110 Hb_007576_110 Hb_000366_120--Hb_007576_110 Hb_021409_040 Hb_021409_040 Hb_000366_120--Hb_021409_040 Hb_004195_200 Hb_004195_200 Hb_000366_120--Hb_004195_200 Hb_014497_050 Hb_014497_050 Hb_000366_120--Hb_014497_050 Hb_001409_020 Hb_001409_020 Hb_000366_120--Hb_001409_020 Hb_000789_310 Hb_000789_310 Hb_000366_120--Hb_000789_310 Hb_135831_010 Hb_135831_010 Hb_000982_060--Hb_135831_010 Hb_000442_150 Hb_000442_150 Hb_000982_060--Hb_000442_150 Hb_003893_030 Hb_003893_030 Hb_000982_060--Hb_003893_030 Hb_001135_130 Hb_001135_130 Hb_000982_060--Hb_001135_130 Hb_000683_070 Hb_000683_070 Hb_000982_060--Hb_000683_070 Hb_002671_140 Hb_002671_140 Hb_000562_090--Hb_002671_140 Hb_003609_030 Hb_003609_030 Hb_000562_090--Hb_003609_030 Hb_008643_210 Hb_008643_210 Hb_000562_090--Hb_008643_210 Hb_013399_100 Hb_013399_100 Hb_000562_090--Hb_013399_100 Hb_003464_050 Hb_003464_050 Hb_000562_090--Hb_003464_050 Hb_000915_020 Hb_000915_020 Hb_000562_090--Hb_000915_020 Hb_030385_010 Hb_030385_010 Hb_001541_230--Hb_030385_010 Hb_000227_090 Hb_000227_090 Hb_001541_230--Hb_000227_090 Hb_006816_050 Hb_006816_050 Hb_001541_230--Hb_006816_050 Hb_005503_040 Hb_005503_040 Hb_001541_230--Hb_005503_040 Hb_000011_190 Hb_000011_190 Hb_001541_230--Hb_000011_190 Hb_000679_310 Hb_000679_310 Hb_028962_020--Hb_000679_310 Hb_002028_210 Hb_002028_210 Hb_028962_020--Hb_002028_210 Hb_001408_040 Hb_001408_040 Hb_028962_020--Hb_001408_040 Hb_002205_110 Hb_002205_110 Hb_028962_020--Hb_002205_110 Hb_005653_090 Hb_005653_090 Hb_028962_020--Hb_005653_090 Hb_028962_020--Hb_000886_050 Hb_002078_220 Hb_002078_220 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_003464_090 Hb_003464_090 Hb_000886_050--Hb_003464_090 Hb_000076_160 Hb_000076_160 Hb_000886_050--Hb_000076_160 Hb_000886_050--Hb_005653_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0748 40.4977 18.4406 29.1241 30.0159 29.3712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.4527 21.8697 20.0974 15.5084 15.1758

CAGE analysis