Hb_001135_130

Information

Type -
Description -
Location Contig1135: 165966-168192
Sequence    

Annotation

kegg
ID rcu:RCOM_0744030
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID KDO67869.1
description hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID A0A067FKE0
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0171752mg PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase cdl1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04045: 165810-185536 , PASA_asmbl_04046: 166987-185536 , PASA_asmbl_04047: 166713-166966
cDNA
(Sanger)
(ID:Location)		 026_C13.ab1: 167376-185532

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_130 0.0 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
2 Hb_004310_020 0.0737253351 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
3 Hb_000982_060 0.0811837509 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
4 Hb_000442_150 0.0834572522 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
5 Hb_000205_300 0.0853793885 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
6 Hb_002235_210 0.0854907449 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
7 Hb_057878_010 0.0860977695 - - hypothetical protein VITISV_036304 [Vitis vinifera]
8 Hb_011310_210 0.0881713884 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
9 Hb_010712_030 0.0882257255 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003549_150 0.0888357956 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
11 Hb_002671_140 0.0902928512 - - calcium-dependent protein kinase [Hevea brasiliensis]
12 Hb_001051_080 0.0912367778 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
13 Hb_003640_040 0.0924016137 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
14 Hb_000309_040 0.0926700669 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
15 Hb_000125_130 0.0934852304 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
16 Hb_034506_010 0.0936969523 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
17 Hb_000070_080 0.0951614401 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
18 Hb_000080_150 0.0961086407 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
19 Hb_000523_040 0.0962652511 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
20 Hb_002400_470 0.0968613978 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_130 Hb_001135_130 Hb_004310_020 Hb_004310_020 Hb_001135_130--Hb_004310_020 Hb_000982_060 Hb_000982_060 Hb_001135_130--Hb_000982_060 Hb_000442_150 Hb_000442_150 Hb_001135_130--Hb_000442_150 Hb_000205_300 Hb_000205_300 Hb_001135_130--Hb_000205_300 Hb_002235_210 Hb_002235_210 Hb_001135_130--Hb_002235_210 Hb_057878_010 Hb_057878_010 Hb_001135_130--Hb_057878_010 Hb_010712_030 Hb_010712_030 Hb_004310_020--Hb_010712_030 Hb_004310_020--Hb_000205_300 Hb_158062_010 Hb_158062_010 Hb_004310_020--Hb_158062_010 Hb_001051_080 Hb_001051_080 Hb_004310_020--Hb_001051_080 Hb_003549_150 Hb_003549_150 Hb_004310_020--Hb_003549_150 Hb_135831_010 Hb_135831_010 Hb_000982_060--Hb_135831_010 Hb_000000_270 Hb_000000_270 Hb_000982_060--Hb_000000_270 Hb_000982_060--Hb_000442_150 Hb_003893_030 Hb_003893_030 Hb_000982_060--Hb_003893_030 Hb_000683_070 Hb_000683_070 Hb_000982_060--Hb_000683_070 Hb_008246_040 Hb_008246_040 Hb_000442_150--Hb_008246_040 Hb_002671_140 Hb_002671_140 Hb_000442_150--Hb_002671_140 Hb_000442_150--Hb_057878_010 Hb_000442_150--Hb_003893_030 Hb_000603_150 Hb_000603_150 Hb_000205_300--Hb_000603_150 Hb_000205_300--Hb_158062_010 Hb_000120_670 Hb_000120_670 Hb_000205_300--Hb_000120_670 Hb_003693_070 Hb_003693_070 Hb_000205_300--Hb_003693_070 Hb_000205_300--Hb_010712_030 Hb_004631_180 Hb_004631_180 Hb_002235_210--Hb_004631_180 Hb_002235_210--Hb_001051_080 Hb_002235_210--Hb_003893_030 Hb_012322_020 Hb_012322_020 Hb_002235_210--Hb_012322_020 Hb_006916_040 Hb_006916_040 Hb_002235_210--Hb_006916_040 Hb_002235_210--Hb_004310_020 Hb_002400_470 Hb_002400_470 Hb_057878_010--Hb_002400_470 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_000236_380 Hb_000236_380 Hb_057878_010--Hb_000236_380 Hb_057878_010--Hb_002671_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3485 14.2208 10.0466 16.6681 13.1312 17.1825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6026 8.90042 13.2271 7.08163 4.08702

CAGE analysis