Hb_000207_120

Information

Type -
Description -
Location Contig207: 165390-168163
Sequence    

Annotation

kegg
ID rcu:RCOM_0685920
description peptidase, putative
nr
ID XP_012065774.1
description PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
swissprot
ID Q9MAP7
description Subtilisin-like protease SBT3.5 OS=Arabidopsis thaliana GN=SBT3.5 PE=1 SV=1
trembl
ID B9SLE5
description Peptidase, putative OS=Ricinus communis GN=RCOM_0685920 PE=4 SV=1
Gene Ontology
ID GO:0005829
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21308: 165495-168155
cDNA
(Sanger)
(ID:Location)		 051_J09.ab1: 165545-168050

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_120 0.0 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
2 Hb_030385_010 0.0979126828 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
3 Hb_003693_070 0.1131284127 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
4 Hb_002946_160 0.1134255857 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
5 Hb_033594_030 0.1158668109 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
6 Hb_106724_020 0.1191505667 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
7 Hb_000808_280 0.1209188916 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010417_080 0.1213025481 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
9 Hb_007403_060 0.1221022019 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
10 Hb_030116_020 0.1272957842 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
11 Hb_000270_490 0.1274603392 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
12 Hb_000120_060 0.1284006912 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
13 Hb_000683_070 0.1288489102 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
14 Hb_001541_230 0.1289400385 - - unnamed protein product [Vitis vinifera]
15 Hb_000630_050 0.1297744206 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000627_230 0.1297827753 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
17 Hb_000270_630 0.1304039042 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
18 Hb_000107_410 0.1315109912 - - PREDICTED: expansin-A20 [Jatropha curcas]
19 Hb_012395_180 0.132266544 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
20 Hb_003376_330 0.1323988816 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]

Gene co-expression network

sample Hb_000207_120 Hb_000207_120 Hb_030385_010 Hb_030385_010 Hb_000207_120--Hb_030385_010 Hb_003693_070 Hb_003693_070 Hb_000207_120--Hb_003693_070 Hb_002946_160 Hb_002946_160 Hb_000207_120--Hb_002946_160 Hb_033594_030 Hb_033594_030 Hb_000207_120--Hb_033594_030 Hb_106724_020 Hb_106724_020 Hb_000207_120--Hb_106724_020 Hb_000808_280 Hb_000808_280 Hb_000207_120--Hb_000808_280 Hb_001541_230 Hb_001541_230 Hb_030385_010--Hb_001541_230 Hb_007086_010 Hb_007086_010 Hb_030385_010--Hb_007086_010 Hb_004577_020 Hb_004577_020 Hb_030385_010--Hb_004577_020 Hb_010417_080 Hb_010417_080 Hb_030385_010--Hb_010417_080 Hb_030385_010--Hb_106724_020 Hb_000120_060 Hb_000120_060 Hb_003693_070--Hb_000120_060 Hb_010142_030 Hb_010142_030 Hb_003693_070--Hb_010142_030 Hb_003693_070--Hb_000808_280 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_000270_630 Hb_000270_630 Hb_002946_160--Hb_000270_630 Hb_030116_020 Hb_030116_020 Hb_002946_160--Hb_030116_020 Hb_000367_010 Hb_000367_010 Hb_002946_160--Hb_000367_010 Hb_007904_160 Hb_007904_160 Hb_002946_160--Hb_007904_160 Hb_000109_210 Hb_000109_210 Hb_002946_160--Hb_000109_210 Hb_000983_150 Hb_000983_150 Hb_002946_160--Hb_000983_150 Hb_000270_490 Hb_000270_490 Hb_033594_030--Hb_000270_490 Hb_003994_290 Hb_003994_290 Hb_033594_030--Hb_003994_290 Hb_003050_270 Hb_003050_270 Hb_033594_030--Hb_003050_270 Hb_003571_030 Hb_003571_030 Hb_033594_030--Hb_003571_030 Hb_073973_100 Hb_073973_100 Hb_033594_030--Hb_073973_100 Hb_000630_050 Hb_000630_050 Hb_106724_020--Hb_000630_050 Hb_003813_130 Hb_003813_130 Hb_106724_020--Hb_003813_130 Hb_004055_030 Hb_004055_030 Hb_106724_020--Hb_004055_030 Hb_001102_140 Hb_001102_140 Hb_106724_020--Hb_001102_140 Hb_106724_020--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_106724_020--Hb_001454_130 Hb_000808_280--Hb_000630_050 Hb_000085_160 Hb_000085_160 Hb_000808_280--Hb_000085_160 Hb_000083_250 Hb_000083_250 Hb_000808_280--Hb_000083_250 Hb_000808_280--Hb_000120_060 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
407.413 152.107 115.665 312.399 258.522 222.166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
386.856 197.754 132.329 307.038 79.597

CAGE analysis