Hb_003571_030

Information

Type -
Description -
Location Contig3571: 11578-18042
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05560g
description POPTRDRAFT_814847; hypothetical protein
nr
ID KDP22063.1
description hypothetical protein JCGZ_25894 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JGY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25894 PE=4 SV=1
Gene Ontology
ID GO:0046556
description hypothetical protein POPTR_0001s05560g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36849: 17261-17497 , PASA_asmbl_36850: 17539-17818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003571_030 0.0 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
2 Hb_027380_130 0.0876584983 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
3 Hb_084646_010 0.1003272584 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
4 Hb_000483_220 0.1079600832 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
5 Hb_000207_330 0.1114786786 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
6 Hb_000646_050 0.1118829543 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
7 Hb_005396_150 0.1155261387 - - protein binding protein, putative [Ricinus communis]
8 Hb_000928_020 0.1161725553 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
9 Hb_003647_060 0.1168327344 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
10 Hb_000202_040 0.1198792899 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
11 Hb_000787_020 0.1204327996 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000116_270 0.1206334859 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
13 Hb_005306_180 0.1212025485 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
14 Hb_002042_020 0.1212225214 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
15 Hb_155159_020 0.1216956964 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
16 Hb_004672_040 0.1221577304 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
17 Hb_000482_020 0.122361394 - - cell wall invertase [Manihot esculenta]
18 Hb_007416_090 0.1225242184 - - UDP-sugar transporter, putative [Ricinus communis]
19 Hb_000676_250 0.1239585025 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
20 Hb_001016_120 0.1255714463 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003571_030 Hb_003571_030 Hb_027380_130 Hb_027380_130 Hb_003571_030--Hb_027380_130 Hb_084646_010 Hb_084646_010 Hb_003571_030--Hb_084646_010 Hb_000483_220 Hb_000483_220 Hb_003571_030--Hb_000483_220 Hb_000207_330 Hb_000207_330 Hb_003571_030--Hb_000207_330 Hb_000646_050 Hb_000646_050 Hb_003571_030--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003571_030--Hb_005396_150 Hb_001300_150 Hb_001300_150 Hb_027380_130--Hb_001300_150 Hb_023344_120 Hb_023344_120 Hb_027380_130--Hb_023344_120 Hb_000676_250 Hb_000676_250 Hb_027380_130--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_027380_130--Hb_001159_130 Hb_065525_040 Hb_065525_040 Hb_027380_130--Hb_065525_040 Hb_000703_350 Hb_000703_350 Hb_027380_130--Hb_000703_350 Hb_000116_270 Hb_000116_270 Hb_084646_010--Hb_000116_270 Hb_001016_120 Hb_001016_120 Hb_084646_010--Hb_001016_120 Hb_155159_020 Hb_155159_020 Hb_084646_010--Hb_155159_020 Hb_000787_020 Hb_000787_020 Hb_084646_010--Hb_000787_020 Hb_084646_010--Hb_027380_130 Hb_084646_010--Hb_001159_130 Hb_050454_010 Hb_050454_010 Hb_000483_220--Hb_050454_010 Hb_000665_060 Hb_000665_060 Hb_000483_220--Hb_000665_060 Hb_007416_090 Hb_007416_090 Hb_000483_220--Hb_007416_090 Hb_004607_050 Hb_004607_050 Hb_000483_220--Hb_004607_050 Hb_000260_010 Hb_000260_010 Hb_000483_220--Hb_000260_010 Hb_001163_100 Hb_001163_100 Hb_000483_220--Hb_001163_100 Hb_000768_200 Hb_000768_200 Hb_000207_330--Hb_000768_200 Hb_000207_330--Hb_065525_040 Hb_004672_040 Hb_004672_040 Hb_000207_330--Hb_004672_040 Hb_006478_020 Hb_006478_020 Hb_000207_330--Hb_006478_020 Hb_000207_330--Hb_000665_060 Hb_005054_110 Hb_005054_110 Hb_000207_330--Hb_005054_110 Hb_001617_050 Hb_001617_050 Hb_000646_050--Hb_001617_050 Hb_006938_080 Hb_006938_080 Hb_000646_050--Hb_006938_080 Hb_005348_140 Hb_005348_140 Hb_000646_050--Hb_005348_140 Hb_000003_250 Hb_000003_250 Hb_000646_050--Hb_000003_250 Hb_000646_050--Hb_065525_040 Hb_000646_050--Hb_027380_130 Hb_007747_080 Hb_007747_080 Hb_005396_150--Hb_007747_080 Hb_005634_010 Hb_005634_010 Hb_005396_150--Hb_005634_010 Hb_000049_210 Hb_000049_210 Hb_005396_150--Hb_000049_210 Hb_112198_010 Hb_112198_010 Hb_005396_150--Hb_112198_010 Hb_008725_230 Hb_008725_230 Hb_005396_150--Hb_008725_230 Hb_000140_290 Hb_000140_290 Hb_005396_150--Hb_000140_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.70574 2.1577 2.20512 5.72393 1.91595 2.55536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.53132 2.96862 6.02738 4.38166 3.12013

CAGE analysis