Hb_003688_130

Information

Type -
Description -
Location Contig3688: 77669-81874
Sequence    

Annotation

kegg
ID rcu:RCOM_1469840
description phosphoserine phosphatase, putative (EC:3.1.3.3)
nr
ID XP_002514657.1
description phosphoserine phosphatase, putative [Ricinus communis]
swissprot
ID O82796
description Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2
trembl
ID B9RLN8
description Phosphoserine phosphatase, putative OS=Ricinus communis GN=RCOM_1469840 PE=4 SV=1
Gene Ontology
ID GO:0000287
description phosphoserine chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37975: 62562-81888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_130 0.0 - - phosphoserine phosphatase, putative [Ricinus communis]
2 Hb_054865_120 0.06912909 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
3 Hb_005288_190 0.0731441866 - - PREDICTED: exportin-4 [Jatropha curcas]
4 Hb_002495_040 0.0776760567 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
5 Hb_000025_470 0.0793024945 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
6 Hb_001579_270 0.0891352287 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
7 Hb_008748_040 0.0891750058 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
8 Hb_001369_180 0.0893400371 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
9 Hb_003030_070 0.089459216 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
10 Hb_002728_070 0.0905744348 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
11 Hb_011671_040 0.0907343472 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
12 Hb_003125_160 0.0937370786 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
13 Hb_007594_130 0.0944673618 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
14 Hb_002671_100 0.0949129074 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
15 Hb_004310_130 0.0950411053 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
16 Hb_000606_090 0.0952981698 - - Far upstream element-binding protein, putative [Ricinus communis]
17 Hb_001454_400 0.0968189515 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
18 Hb_007672_060 0.097007187 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
19 Hb_027043_020 0.0975898321 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000465_430 0.1016872023 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]

Gene co-expression network

sample Hb_003688_130 Hb_003688_130 Hb_054865_120 Hb_054865_120 Hb_003688_130--Hb_054865_120 Hb_005288_190 Hb_005288_190 Hb_003688_130--Hb_005288_190 Hb_002495_040 Hb_002495_040 Hb_003688_130--Hb_002495_040 Hb_000025_470 Hb_000025_470 Hb_003688_130--Hb_000025_470 Hb_001579_270 Hb_001579_270 Hb_003688_130--Hb_001579_270 Hb_008748_040 Hb_008748_040 Hb_003688_130--Hb_008748_040 Hb_054865_120--Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_054865_120--Hb_002728_070 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_054865_120--Hb_008748_040 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_002311_180 Hb_002311_180 Hb_005288_190--Hb_002311_180 Hb_002739_050 Hb_002739_050 Hb_005288_190--Hb_002739_050 Hb_005730_120 Hb_005730_120 Hb_005288_190--Hb_005730_120 Hb_001416_010 Hb_001416_010 Hb_005288_190--Hb_001416_010 Hb_001454_400 Hb_001454_400 Hb_005288_190--Hb_001454_400 Hb_000465_430 Hb_000465_430 Hb_002495_040--Hb_000465_430 Hb_003030_070 Hb_003030_070 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_000092_100 Hb_000092_100 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080 Hb_000025_470--Hb_002728_070 Hb_000025_470--Hb_008748_040 Hb_011671_040 Hb_011671_040 Hb_000025_470--Hb_011671_040 Hb_000058_100 Hb_000058_100 Hb_000025_470--Hb_000058_100 Hb_007672_060 Hb_007672_060 Hb_001579_270--Hb_007672_060 Hb_000599_300 Hb_000599_300 Hb_001579_270--Hb_000599_300 Hb_000054_090 Hb_000054_090 Hb_001579_270--Hb_000054_090 Hb_001579_270--Hb_054865_120 Hb_033594_120 Hb_033594_120 Hb_001579_270--Hb_033594_120 Hb_003633_030 Hb_003633_030 Hb_001579_270--Hb_003633_030 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_000212_330 Hb_000212_330 Hb_008748_040--Hb_000212_330 Hb_008748_040--Hb_000054_090 Hb_008748_040--Hb_011671_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.4791 16.5919 29.7825 39.0435 43.752 52.1467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.8279 37.4498 17.6313 21.0869 24.7769

CAGE analysis