Hb_001416_010

Information

Type -
Description -
Location Contig1416: 8583-9257
Sequence    

Annotation

kegg
ID rcu:RCOM_0854060
description Thioredoxin H-type, putative
nr
ID XP_002517458.1
description Thioredoxin H-type, putative [Ricinus communis]
swissprot
ID Q38879
description Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2
trembl
ID B9RUL3
description Thioredoxin H-type, putative OS=Ricinus communis GN=RCOM_0854060 PE=4 SV=1
Gene Ontology
ID GO:0015035
description thioredoxin h2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11173: 8533-9488
cDNA
(Sanger)
(ID:Location)		 016_K16.ab1: 8583-9388

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001416_010 0.0 - - Thioredoxin H-type, putative [Ricinus communis]
2 Hb_005288_190 0.0934563863 - - PREDICTED: exportin-4 [Jatropha curcas]
3 Hb_001454_400 0.0971611966 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
4 Hb_007875_030 0.1015931177 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
5 Hb_002601_110 0.1033295564 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
6 Hb_003878_010 0.1037437538 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
7 Hb_003544_020 0.1070684152 - - PREDICTED: elongin-A [Jatropha curcas]
8 Hb_001221_320 0.1081152773 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
9 Hb_003688_130 0.1099287821 - - phosphoserine phosphatase, putative [Ricinus communis]
10 Hb_005730_120 0.1131450582 - - PREDICTED: protein WHI4 [Jatropha curcas]
11 Hb_002245_030 0.1164867341 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_001814_070 0.1175767487 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
13 Hb_001140_370 0.1190685238 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
14 Hb_001269_610 0.1217297265 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
15 Hb_008748_040 0.1248653686 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
16 Hb_005773_060 0.12564079 - - defender against cell death, putative [Ricinus communis]
17 Hb_001703_060 0.1260070918 - - protein kinase, putative [Ricinus communis]
18 Hb_003893_030 0.1260105671 - - Protein yrdA, putative [Ricinus communis]
19 Hb_002311_180 0.1266374488 - - drought-responsive family protein [Populus trichocarpa]
20 Hb_032808_010 0.1271970822 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]

Gene co-expression network

sample Hb_001416_010 Hb_001416_010 Hb_005288_190 Hb_005288_190 Hb_001416_010--Hb_005288_190 Hb_001454_400 Hb_001454_400 Hb_001416_010--Hb_001454_400 Hb_007875_030 Hb_007875_030 Hb_001416_010--Hb_007875_030 Hb_002601_110 Hb_002601_110 Hb_001416_010--Hb_002601_110 Hb_003878_010 Hb_003878_010 Hb_001416_010--Hb_003878_010 Hb_003544_020 Hb_003544_020 Hb_001416_010--Hb_003544_020 Hb_003688_130 Hb_003688_130 Hb_005288_190--Hb_003688_130 Hb_002311_180 Hb_002311_180 Hb_005288_190--Hb_002311_180 Hb_002739_050 Hb_002739_050 Hb_005288_190--Hb_002739_050 Hb_005730_120 Hb_005730_120 Hb_005288_190--Hb_005730_120 Hb_005288_190--Hb_001454_400 Hb_011970_030 Hb_011970_030 Hb_001454_400--Hb_011970_030 Hb_001454_400--Hb_003878_010 Hb_000085_180 Hb_000085_180 Hb_001454_400--Hb_000085_180 Hb_000640_240 Hb_000640_240 Hb_001454_400--Hb_000640_240 Hb_024071_020 Hb_024071_020 Hb_001454_400--Hb_024071_020 Hb_000960_060 Hb_000960_060 Hb_001454_400--Hb_000960_060 Hb_007875_030--Hb_003878_010 Hb_002893_050 Hb_002893_050 Hb_007875_030--Hb_002893_050 Hb_000610_050 Hb_000610_050 Hb_007875_030--Hb_000610_050 Hb_007875_030--Hb_024071_020 Hb_001047_240 Hb_001047_240 Hb_007875_030--Hb_001047_240 Hb_001140_370 Hb_001140_370 Hb_007875_030--Hb_001140_370 Hb_002820_050 Hb_002820_050 Hb_002601_110--Hb_002820_050 Hb_002245_030 Hb_002245_030 Hb_002601_110--Hb_002245_030 Hb_006059_050 Hb_006059_050 Hb_002601_110--Hb_006059_050 Hb_000111_380 Hb_000111_380 Hb_002601_110--Hb_000111_380 Hb_004108_070 Hb_004108_070 Hb_002601_110--Hb_004108_070 Hb_001124_090 Hb_001124_090 Hb_002601_110--Hb_001124_090 Hb_128048_010 Hb_128048_010 Hb_003878_010--Hb_128048_010 Hb_001814_070 Hb_001814_070 Hb_003878_010--Hb_001814_070 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230 Hb_005773_060 Hb_005773_060 Hb_003544_020--Hb_005773_060 Hb_001221_320 Hb_001221_320 Hb_003544_020--Hb_001221_320 Hb_000186_190 Hb_000186_190 Hb_003544_020--Hb_000186_190 Hb_002811_260 Hb_002811_260 Hb_003544_020--Hb_002811_260 Hb_008686_080 Hb_008686_080 Hb_003544_020--Hb_008686_080 Hb_003544_020--Hb_001814_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
277.155 123.246 195.695 338.08 226.769 210.801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
492.365 295.69 112.478 141.461 96.1111

CAGE analysis