Hb_001047_240

Information

Type transcription factor
Description TF Family: GNAT
Location Contig1047: 147798-151526
Sequence    

Annotation

kegg
ID vvi:100252851
description N-alpha-acetyltransferase 20
nr
ID XP_012064613.1
description PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
swissprot
ID P61600
description N-alpha-acetyltransferase 20 OS=Mus musculus GN=Naa20 PE=2 SV=1
trembl
ID A0A067LHP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24107 PE=4 SV=1
Gene Ontology
ID GO:0008080
description n-alpha-acetyltransferase 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01633: 145052-147261 , PASA_asmbl_01634: 147912-151512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_240 0.0 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
2 Hb_076693_030 0.0546971088 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
3 Hb_007875_030 0.0775557109 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
4 Hb_004784_020 0.0784439137 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
5 Hb_004162_210 0.0800904318 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
6 Hb_000331_450 0.0881104158 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
7 Hb_001318_250 0.0888092921 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
8 Hb_001016_030 0.0895000555 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
9 Hb_001124_090 0.0912830193 - - acyl carrier protein, putative [Ricinus communis]
10 Hb_010042_010 0.0915647715 - - Urease accessory protein ureD, putative [Ricinus communis]
11 Hb_001057_040 0.0931651001 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
12 Hb_152784_010 0.0946199194 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
13 Hb_001140_370 0.0949341272 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
14 Hb_000934_250 0.0957601187 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
15 Hb_001824_010 0.0971993473 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_065525_020 0.0977714409 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
17 Hb_000102_020 0.0991514582 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
18 Hb_000987_070 0.0995134259 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
19 Hb_000982_090 0.0997549327 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
20 Hb_000207_400 0.1000009882 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001047_240 Hb_001047_240 Hb_076693_030 Hb_076693_030 Hb_001047_240--Hb_076693_030 Hb_007875_030 Hb_007875_030 Hb_001047_240--Hb_007875_030 Hb_004784_020 Hb_004784_020 Hb_001047_240--Hb_004784_020 Hb_004162_210 Hb_004162_210 Hb_001047_240--Hb_004162_210 Hb_000331_450 Hb_000331_450 Hb_001047_240--Hb_000331_450 Hb_001318_250 Hb_001318_250 Hb_001047_240--Hb_001318_250 Hb_002596_040 Hb_002596_040 Hb_076693_030--Hb_002596_040 Hb_001824_010 Hb_001824_010 Hb_076693_030--Hb_001824_010 Hb_008695_040 Hb_008695_040 Hb_076693_030--Hb_008695_040 Hb_076693_030--Hb_007875_030 Hb_007735_030 Hb_007735_030 Hb_076693_030--Hb_007735_030 Hb_003878_010 Hb_003878_010 Hb_007875_030--Hb_003878_010 Hb_002893_050 Hb_002893_050 Hb_007875_030--Hb_002893_050 Hb_000610_050 Hb_000610_050 Hb_007875_030--Hb_000610_050 Hb_024071_020 Hb_024071_020 Hb_007875_030--Hb_024071_020 Hb_001140_370 Hb_001140_370 Hb_007875_030--Hb_001140_370 Hb_078185_010 Hb_078185_010 Hb_004784_020--Hb_078185_010 Hb_066768_010 Hb_066768_010 Hb_004784_020--Hb_066768_010 Hb_031089_040 Hb_031089_040 Hb_004784_020--Hb_031089_040 Hb_005278_020 Hb_005278_020 Hb_004784_020--Hb_005278_020 Hb_019762_020 Hb_019762_020 Hb_004784_020--Hb_019762_020 Hb_004800_060 Hb_004800_060 Hb_004162_210--Hb_004800_060 Hb_004162_210--Hb_007875_030 Hb_153544_010 Hb_153544_010 Hb_004162_210--Hb_153544_010 Hb_124953_020 Hb_124953_020 Hb_004162_210--Hb_124953_020 Hb_006915_040 Hb_006915_040 Hb_004162_210--Hb_006915_040 Hb_015807_040 Hb_015807_040 Hb_000331_450--Hb_015807_040 Hb_010042_010 Hb_010042_010 Hb_000331_450--Hb_010042_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_000934_250 Hb_000934_250 Hb_001318_250--Hb_000934_250 Hb_001124_090 Hb_001124_090 Hb_001318_250--Hb_001124_090 Hb_152784_010 Hb_152784_010 Hb_001318_250--Hb_152784_010 Hb_000317_390 Hb_000317_390 Hb_001318_250--Hb_000317_390 Hb_000103_320 Hb_000103_320 Hb_001318_250--Hb_000103_320 Hb_001016_030 Hb_001016_030 Hb_001318_250--Hb_001016_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0889 15.3707 21.323 47.6162 23.1876 38.0886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.5087 60.6621 31.6953 27.4275 11.2644

CAGE analysis