Hb_005278_020

Information

Type -
Description -
Location Contig5278: 32190-36574
Sequence    

Annotation

kegg
ID rcu:RCOM_1418970
description programmed cell death protein, putative
nr
ID XP_012067160.1
description PREDICTED: sorcin-like [Jatropha curcas]
swissprot
ID Q94743
description Sorcin OS=Schistosoma japonicum PE=2 SV=1
trembl
ID A0A067L0N2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03089 PE=4 SV=1
Gene Ontology
ID GO:0004683
description sorcin-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47128: 32127-59801 , PASA_asmbl_47129: 33621-34074 , PASA_asmbl_47133: 32127-60867
cDNA
(Sanger)
(ID:Location)		 023_C22.ab1: 32167-59703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005278_020 0.0 - - PREDICTED: sorcin-like [Jatropha curcas]
2 Hb_026314_020 0.062345768 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
3 Hb_012022_120 0.0716992107 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
4 Hb_017413_010 0.074215458 - - -
5 Hb_001016_030 0.0760356444 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
6 Hb_001842_040 0.0781135771 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
7 Hb_004784_020 0.0832968252 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
8 Hb_000995_040 0.0844020346 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005667_040 0.0856288769 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
10 Hb_002207_110 0.0865300193 - - -
11 Hb_019762_020 0.0883029715 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
12 Hb_005867_020 0.0915886607 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
13 Hb_000331_450 0.0925054244 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
14 Hb_000005_090 0.0926315708 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
15 Hb_004032_010 0.0952087435 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
16 Hb_002830_020 0.0952244687 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_031089_040 0.0955938192 - - thioredoxin H-type 1 [Hevea brasiliensis]
18 Hb_078185_010 0.0961383178 - - -
19 Hb_010042_010 0.0962213259 - - Urease accessory protein ureD, putative [Ricinus communis]
20 Hb_001318_250 0.0962222064 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]

Gene co-expression network

sample Hb_005278_020 Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005278_020--Hb_026314_020 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_004784_020 Hb_004784_020 Hb_005278_020--Hb_004784_020 Hb_000826_100 Hb_000826_100 Hb_026314_020--Hb_000826_100 Hb_002343_060 Hb_002343_060 Hb_026314_020--Hb_002343_060 Hb_000005_090 Hb_000005_090 Hb_026314_020--Hb_000005_090 Hb_019762_020 Hb_019762_020 Hb_026314_020--Hb_019762_020 Hb_001318_250 Hb_001318_250 Hb_026314_020--Hb_001318_250 Hb_000505_140 Hb_000505_140 Hb_012022_120--Hb_000505_140 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_032202_090 Hb_032202_090 Hb_012022_120--Hb_032202_090 Hb_000000_170 Hb_000000_170 Hb_012022_120--Hb_000000_170 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_000789_230 Hb_000789_230 Hb_017413_010--Hb_000789_230 Hb_000331_450 Hb_000331_450 Hb_017413_010--Hb_000331_450 Hb_017491_060 Hb_017491_060 Hb_017413_010--Hb_017491_060 Hb_006846_060 Hb_006846_060 Hb_017413_010--Hb_006846_060 Hb_000373_120 Hb_000373_120 Hb_017413_010--Hb_000373_120 Hb_001140_370 Hb_001140_370 Hb_001016_030--Hb_001140_370 Hb_001616_040 Hb_001616_040 Hb_001016_030--Hb_001616_040 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_003126_090 Hb_003126_090 Hb_001016_030--Hb_003126_090 Hb_001016_030--Hb_002830_020 Hb_000441_190 Hb_000441_190 Hb_001842_040--Hb_000441_190 Hb_001461_010 Hb_001461_010 Hb_001842_040--Hb_001461_010 Hb_007100_030 Hb_007100_030 Hb_001842_040--Hb_007100_030 Hb_000283_110 Hb_000283_110 Hb_001842_040--Hb_000283_110 Hb_003893_050 Hb_003893_050 Hb_001842_040--Hb_003893_050 Hb_078185_010 Hb_078185_010 Hb_004784_020--Hb_078185_010 Hb_066768_010 Hb_066768_010 Hb_004784_020--Hb_066768_010 Hb_001047_240 Hb_001047_240 Hb_004784_020--Hb_001047_240 Hb_031089_040 Hb_031089_040 Hb_004784_020--Hb_031089_040 Hb_004784_020--Hb_019762_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3473 9.27305 16.5557 43.2896 26.4094 36.4845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.3257 74.8485 33.6443 13.4734 18.6538

CAGE analysis