Hb_000441_190

Information

Type -
Description -
Location Contig441: 252985-258950
Sequence    

Annotation

kegg
ID vvi:100257803
description GDP-L-galactose phosphorylase 1-like
nr
ID XP_002263657.1
description PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
swissprot
ID Q8RWE8
description GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1
trembl
ID F6HLY2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g05000 PE=4 SV=1
Gene Ontology
ID GO:0080048
description gdp-l-galactose phosphorylase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42643: 252995-258895
cDNA
(Sanger)
(ID:Location)		 034_K05.ab1: 255722-258895

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_190 0.0 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
2 Hb_001842_040 0.0512286545 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
3 Hb_003893_050 0.0731939809 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
4 Hb_000283_110 0.073920846 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
5 Hb_001461_010 0.0776351447 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
6 Hb_003994_040 0.0777528356 - - -
7 Hb_000023_340 0.078680291 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
8 Hb_003203_040 0.0786884369 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
9 Hb_011644_030 0.0786998646 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
10 Hb_001141_030 0.0804408209 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
11 Hb_003226_210 0.0806660697 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
12 Hb_007100_030 0.0811252988 - - 40S ribosomal protein S17B [Hevea brasiliensis]
13 Hb_001085_120 0.0819485481 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
14 Hb_005063_050 0.0827708835 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
15 Hb_002631_020 0.0842009169 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
16 Hb_027625_010 0.0850416578 - - PREDICTED: protein sym-1-like [Jatropha curcas]
17 Hb_000173_220 0.0861562891 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
18 Hb_000134_070 0.0872569598 - - 60S ribosomal protein L6, putative [Ricinus communis]
19 Hb_001191_090 0.0878626233 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
20 Hb_003455_040 0.0881151648 - - hypothetical protein JCGZ_17270 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_190 Hb_000441_190 Hb_001842_040 Hb_001842_040 Hb_000441_190--Hb_001842_040 Hb_003893_050 Hb_003893_050 Hb_000441_190--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_000441_190--Hb_000283_110 Hb_001461_010 Hb_001461_010 Hb_000441_190--Hb_001461_010 Hb_003994_040 Hb_003994_040 Hb_000441_190--Hb_003994_040 Hb_000023_340 Hb_000023_340 Hb_000441_190--Hb_000023_340 Hb_001842_040--Hb_001461_010 Hb_005278_020 Hb_005278_020 Hb_001842_040--Hb_005278_020 Hb_007100_030 Hb_007100_030 Hb_001842_040--Hb_007100_030 Hb_001842_040--Hb_000283_110 Hb_001842_040--Hb_003893_050 Hb_005063_050 Hb_005063_050 Hb_003893_050--Hb_005063_050 Hb_003893_050--Hb_000283_110 Hb_002431_050 Hb_002431_050 Hb_003893_050--Hb_002431_050 Hb_003203_040 Hb_003203_040 Hb_003893_050--Hb_003203_040 Hb_010672_060 Hb_010672_060 Hb_003893_050--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000283_110--Hb_000029_200 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_003455_040 Hb_003455_040 Hb_003994_040--Hb_003455_040 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_003053_030 Hb_003053_030 Hb_003994_040--Hb_003053_030 Hb_005474_060 Hb_005474_060 Hb_003994_040--Hb_005474_060 Hb_000173_220 Hb_000173_220 Hb_003994_040--Hb_000173_220 Hb_011644_030 Hb_011644_030 Hb_003994_040--Hb_011644_030 Hb_000963_180 Hb_000963_180 Hb_000023_340--Hb_000963_180 Hb_006573_220 Hb_006573_220 Hb_000023_340--Hb_006573_220 Hb_001141_030 Hb_001141_030 Hb_000023_340--Hb_001141_030 Hb_003632_010 Hb_003632_010 Hb_000023_340--Hb_003632_010 Hb_000023_340--Hb_001842_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3482 4.9832 7.57213 17.687 9.49213 18.852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8343 52.5988 31.0305 10.946 9.59162

CAGE analysis