Hb_001140_370

Information

Type -
Description -
Location Contig1140: 313243-316465
Sequence    

Annotation

kegg
ID vvi:104882199
description uncharacterized LOC104882199
nr
ID XP_012090251.1
description PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26101 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04220: 313194-316292 , PASA_asmbl_04221: 313194-314468 , PASA_asmbl_04222: 316056-316292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_370 0.0 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
2 Hb_024071_020 0.049838215 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
3 Hb_001016_030 0.0598393244 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
4 Hb_001157_020 0.0654750666 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
5 Hb_003918_010 0.0685341808 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
6 Hb_006059_050 0.069829928 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
7 Hb_172426_040 0.0709671453 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
8 Hb_000331_200 0.0719015642 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
9 Hb_006693_020 0.071936514 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
10 Hb_000342_100 0.0720840168 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
11 Hb_000020_060 0.0735904426 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
12 Hb_002534_150 0.0739254387 - - catalytic, putative [Ricinus communis]
13 Hb_002893_050 0.074316377 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
14 Hb_000059_370 0.0743878442 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
15 Hb_000982_090 0.074609997 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
16 Hb_002284_240 0.0772059421 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
17 Hb_004108_070 0.0774508252 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
18 Hb_000221_160 0.0774636156 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
19 Hb_003428_030 0.0775529757 - - tRNA, putative [Ricinus communis]
20 Hb_000815_320 0.0789124808 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001140_370 Hb_001140_370 Hb_024071_020 Hb_024071_020 Hb_001140_370--Hb_024071_020 Hb_001016_030 Hb_001016_030 Hb_001140_370--Hb_001016_030 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_003918_010 Hb_003918_010 Hb_001140_370--Hb_003918_010 Hb_006059_050 Hb_006059_050 Hb_001140_370--Hb_006059_050 Hb_172426_040 Hb_172426_040 Hb_001140_370--Hb_172426_040 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_003126_050 Hb_003126_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_001616_040 Hb_001616_040 Hb_001016_030--Hb_001616_040 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_003126_090 Hb_003126_090 Hb_001016_030--Hb_003126_090 Hb_002830_020 Hb_002830_020 Hb_001016_030--Hb_002830_020 Hb_028227_020 Hb_028227_020 Hb_001157_020--Hb_028227_020 Hb_012725_050 Hb_012725_050 Hb_001157_020--Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_001157_020--Hb_001105_030 Hb_001821_010 Hb_001821_010 Hb_001157_020--Hb_001821_010 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_003918_010--Hb_172426_040 Hb_000221_160 Hb_000221_160 Hb_003918_010--Hb_000221_160 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_000028_590 Hb_000028_590 Hb_003918_010--Hb_000028_590 Hb_008511_120 Hb_008511_120 Hb_003918_010--Hb_008511_120 Hb_003151_040 Hb_003151_040 Hb_006059_050--Hb_003151_040 Hb_008013_050 Hb_008013_050 Hb_006059_050--Hb_008013_050 Hb_006059_050--Hb_172426_040 Hb_000373_070 Hb_000373_070 Hb_006059_050--Hb_000373_070 Hb_005846_040 Hb_005846_040 Hb_006059_050--Hb_005846_040 Hb_000152_500 Hb_000152_500 Hb_006059_050--Hb_000152_500 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58754 4.21595 5.31671 7.9887 7.54678 8.00261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2706 14.1472 6.89555 5.77378 4.66453

CAGE analysis