Hb_000028_590

Information

Type -
Description -
Location Contig28: 591536-595752
Sequence    

Annotation

kegg
ID rcu:RCOM_0583080
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_012075040.1
description PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID B9SNX7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0583080 PE=4 SV=1
Gene Ontology
ID GO:0005840
description probable lrr receptor-like serine threonine-protein kinase at1g56140

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29241: 592532-593276 , PASA_asmbl_29242: 593339-594462 , PASA_asmbl_29243: 595238-595762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_590 0.0 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
2 Hb_003918_010 0.0712978984 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
3 Hb_000010_460 0.0841255101 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
4 Hb_008900_010 0.0846132906 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
5 Hb_001427_110 0.0863409263 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
6 Hb_000020_060 0.0875781034 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
7 Hb_005914_010 0.0884322281 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
8 Hb_001575_090 0.0887434417 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
9 Hb_001653_020 0.0897125342 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
10 Hb_031340_050 0.0906022529 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
11 Hb_000221_160 0.0908565135 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
12 Hb_002995_020 0.0926945821 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
13 Hb_000504_140 0.0942472933 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
14 Hb_172426_040 0.0957278428 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
15 Hb_001221_210 0.096728565 - - thiF family protein [Populus trichocarpa]
16 Hb_023732_030 0.0971939686 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
17 Hb_001369_690 0.0975890934 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
18 Hb_001758_100 0.0989613983 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
19 Hb_000976_430 0.0992914073 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
20 Hb_002197_050 0.1000610511 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]

Gene co-expression network

sample Hb_000028_590 Hb_000028_590 Hb_003918_010 Hb_003918_010 Hb_000028_590--Hb_003918_010 Hb_000010_460 Hb_000010_460 Hb_000028_590--Hb_000010_460 Hb_008900_010 Hb_008900_010 Hb_000028_590--Hb_008900_010 Hb_001427_110 Hb_001427_110 Hb_000028_590--Hb_001427_110 Hb_000020_060 Hb_000020_060 Hb_000028_590--Hb_000020_060 Hb_005914_010 Hb_005914_010 Hb_000028_590--Hb_005914_010 Hb_172426_040 Hb_172426_040 Hb_003918_010--Hb_172426_040 Hb_000221_160 Hb_000221_160 Hb_003918_010--Hb_000221_160 Hb_001140_370 Hb_001140_370 Hb_003918_010--Hb_001140_370 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_008511_120 Hb_008511_120 Hb_003918_010--Hb_008511_120 Hb_002061_040 Hb_002061_040 Hb_000010_460--Hb_002061_040 Hb_010080_090 Hb_010080_090 Hb_000010_460--Hb_010080_090 Hb_000010_460--Hb_172426_040 Hb_000010_460--Hb_000020_060 Hb_001832_010 Hb_001832_010 Hb_000010_460--Hb_001832_010 Hb_001758_100 Hb_001758_100 Hb_008900_010--Hb_001758_100 Hb_000120_470 Hb_000120_470 Hb_008900_010--Hb_000120_470 Hb_000504_140 Hb_000504_140 Hb_008900_010--Hb_000504_140 Hb_002284_240 Hb_002284_240 Hb_008900_010--Hb_002284_240 Hb_000146_070 Hb_000146_070 Hb_008900_010--Hb_000146_070 Hb_008900_010--Hb_003918_010 Hb_000589_260 Hb_000589_260 Hb_001427_110--Hb_000589_260 Hb_001427_110--Hb_000020_060 Hb_000331_470 Hb_000331_470 Hb_001427_110--Hb_000331_470 Hb_001653_020 Hb_001653_020 Hb_001427_110--Hb_001653_020 Hb_002995_020 Hb_002995_020 Hb_001427_110--Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_004216_050 Hb_004216_050 Hb_005914_010--Hb_004216_050 Hb_005305_150 Hb_005305_150 Hb_005914_010--Hb_005305_150 Hb_011671_440 Hb_011671_440 Hb_005914_010--Hb_011671_440 Hb_000015_030 Hb_000015_030 Hb_005914_010--Hb_000015_030 Hb_009687_010 Hb_009687_010 Hb_005914_010--Hb_009687_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7311 1.14746 2.01648 1.92377 2.44675 2.26453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00102 3.63899 3.15543 3.3648 0.890359

CAGE analysis