Hb_001427_110

Information

Type -
Description -
Location Contig1427: 115931-124629
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03050g
description POPTRDRAFT_768259; hypothetical protein
nr
ID XP_012064831.1
description PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6G1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05528 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11314: 118078-118629 , PASA_asmbl_11315: 120016-124093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_110 0.0 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
2 Hb_000028_590 0.0863409263 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
3 Hb_000589_260 0.0918695757 - - 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]
4 Hb_000020_060 0.0978992516 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
5 Hb_000331_470 0.0996432808 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
6 Hb_001653_020 0.1007351635 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
7 Hb_002995_020 0.1029997519 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
8 Hb_003787_010 0.1073450516 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
9 Hb_007317_150 0.1075408325 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
10 Hb_000010_460 0.1089763106 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
11 Hb_001534_050 0.1102096495 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
12 Hb_008900_010 0.1115327255 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
13 Hb_000172_640 0.1126453259 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
14 Hb_005365_030 0.1128560224 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
15 Hb_003918_010 0.1130729203 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
16 Hb_000030_290 0.1136070857 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
17 Hb_139294_020 0.114891331 - - vat protein [Cucumis melo]
18 Hb_005914_010 0.1155625264 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
19 Hb_002110_120 0.1159997306 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
20 Hb_002284_240 0.1160431624 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001427_110 Hb_001427_110 Hb_000028_590 Hb_000028_590 Hb_001427_110--Hb_000028_590 Hb_000589_260 Hb_000589_260 Hb_001427_110--Hb_000589_260 Hb_000020_060 Hb_000020_060 Hb_001427_110--Hb_000020_060 Hb_000331_470 Hb_000331_470 Hb_001427_110--Hb_000331_470 Hb_001653_020 Hb_001653_020 Hb_001427_110--Hb_001653_020 Hb_002995_020 Hb_002995_020 Hb_001427_110--Hb_002995_020 Hb_003918_010 Hb_003918_010 Hb_000028_590--Hb_003918_010 Hb_000010_460 Hb_000010_460 Hb_000028_590--Hb_000010_460 Hb_008900_010 Hb_008900_010 Hb_000028_590--Hb_008900_010 Hb_000028_590--Hb_000020_060 Hb_005914_010 Hb_005914_010 Hb_000028_590--Hb_005914_010 Hb_007423_040 Hb_007423_040 Hb_000589_260--Hb_007423_040 Hb_001534_050 Hb_001534_050 Hb_000589_260--Hb_001534_050 Hb_000172_640 Hb_000172_640 Hb_000589_260--Hb_000172_640 Hb_002192_010 Hb_002192_010 Hb_000589_260--Hb_002192_010 Hb_002486_040 Hb_002486_040 Hb_000589_260--Hb_002486_040 Hb_000020_060--Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_000525_020 Hb_000525_020 Hb_000331_470--Hb_000525_020 Hb_000331_470--Hb_003787_010 Hb_006153_110 Hb_006153_110 Hb_000331_470--Hb_006153_110 Hb_001863_430 Hb_001863_430 Hb_000331_470--Hb_001863_430 Hb_010098_050 Hb_010098_050 Hb_000331_470--Hb_010098_050 Hb_000001_060 Hb_000001_060 Hb_000331_470--Hb_000001_060 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_001653_020--Hb_003918_010 Hb_002995_020--Hb_004116_190 Hb_002995_020--Hb_003787_010 Hb_001633_050 Hb_001633_050 Hb_002995_020--Hb_001633_050 Hb_000656_240 Hb_000656_240 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.452 9.10673 12.4497 8.76632 11.1796 11.8981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9609 23.9573 12.4045 17.1575 3.0963

CAGE analysis