Hb_001534_050

Information

Type -
Description -
Location Contig1534: 43551-46769
Sequence    

Annotation

kegg
ID rcu:RCOM_1353300
description hypothetical protein
nr
ID XP_012082485.1
description PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13185: 44634-45940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_050 0.0 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
2 Hb_000462_130 0.0652810469 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
3 Hb_003125_200 0.0826436727 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
4 Hb_028995_040 0.0863329335 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
5 Hb_004491_010 0.093772 - - 60S ribosomal protein L51, putative [Ricinus communis]
6 Hb_000771_120 0.0937966317 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
7 Hb_003078_040 0.0951989776 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
8 Hb_003747_220 0.0963957785 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
9 Hb_000220_040 0.0967156257 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000032_270 0.0971923927 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
11 Hb_012389_020 0.0973390041 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
12 Hb_003126_080 0.0974712939 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
13 Hb_007590_050 0.0976892399 - - NudC domain-containing protein, putative [Ricinus communis]
14 Hb_001404_100 0.09771602 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
15 Hb_000020_060 0.09987943 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
16 Hb_024071_020 0.1019309366 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
17 Hb_001534_120 0.1028967364 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
18 Hb_001552_020 0.1030183049 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
19 Hb_000589_260 0.1033059719 - - 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]
20 Hb_002486_040 0.1033707024 - - -

Gene co-expression network

sample Hb_001534_050 Hb_001534_050 Hb_000462_130 Hb_000462_130 Hb_001534_050--Hb_000462_130 Hb_003125_200 Hb_003125_200 Hb_001534_050--Hb_003125_200 Hb_028995_040 Hb_028995_040 Hb_001534_050--Hb_028995_040 Hb_004491_010 Hb_004491_010 Hb_001534_050--Hb_004491_010 Hb_000771_120 Hb_000771_120 Hb_001534_050--Hb_000771_120 Hb_003078_040 Hb_003078_040 Hb_001534_050--Hb_003078_040 Hb_004453_170 Hb_004453_170 Hb_000462_130--Hb_004453_170 Hb_001832_060 Hb_001832_060 Hb_000462_130--Hb_001832_060 Hb_000462_130--Hb_028995_040 Hb_000698_030 Hb_000698_030 Hb_000462_130--Hb_000698_030 Hb_000462_130--Hb_003078_040 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_004931_070 Hb_004931_070 Hb_003125_200--Hb_004931_070 Hb_012389_020 Hb_012389_020 Hb_003125_200--Hb_012389_020 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080 Hb_025645_010 Hb_025645_010 Hb_000771_120--Hb_025645_010 Hb_000302_270 Hb_000302_270 Hb_000771_120--Hb_000302_270 Hb_003747_200 Hb_003747_200 Hb_000771_120--Hb_003747_200 Hb_007477_070 Hb_007477_070 Hb_000771_120--Hb_007477_070 Hb_001404_100 Hb_001404_100 Hb_000771_120--Hb_001404_100 Hb_000771_120--Hb_028995_040 Hb_003078_040--Hb_000866_270 Hb_003078_040--Hb_025645_010 Hb_000367_200 Hb_000367_200 Hb_003078_040--Hb_000367_200 Hb_003687_230 Hb_003687_230 Hb_003078_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003078_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45251 4.62928 5.30867 2.63919 5.81668 5.33981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.7792 8.444 4.74377 3.47573 1.42071

CAGE analysis