Hb_001552_020

Information

Type -
Description -
Location Contig1552: 25977-28152
Sequence    

Annotation

kegg
ID cmo:103489146
description uncharacterized LOC103489146
nr
ID XP_012079163.1
description PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KA63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12334 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13469: 21281-28029 , PASA_asmbl_13470: 21326-28029 , PASA_asmbl_13472: 26563-26747
cDNA
(Sanger)
(ID:Location)		 010_G08.ab1: 21284-27657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001552_020 0.0 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
2 Hb_028995_040 0.0530587008 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
3 Hb_029866_090 0.0663103127 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
4 Hb_002739_100 0.066795681 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
5 Hb_000656_400 0.0680537686 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
6 Hb_002256_030 0.0686645431 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002346_020 0.0690387733 - - -
8 Hb_000853_420 0.0693342164 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_004491_010 0.0723463905 - - 60S ribosomal protein L51, putative [Ricinus communis]
10 Hb_001242_060 0.072424937 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
11 Hb_031527_040 0.0728715965 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_001259_090 0.0731409189 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
13 Hb_000059_330 0.0734923912 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
14 Hb_000096_070 0.0750753778 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
15 Hb_002928_130 0.0751049706 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
16 Hb_096563_010 0.075606084 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
17 Hb_000661_250 0.076340086 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
18 Hb_002027_250 0.0766271071 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000876_070 0.0777342582 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
20 Hb_005779_060 0.0794931784 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001552_020 Hb_001552_020 Hb_028995_040 Hb_028995_040 Hb_001552_020--Hb_028995_040 Hb_029866_090 Hb_029866_090 Hb_001552_020--Hb_029866_090 Hb_002739_100 Hb_002739_100 Hb_001552_020--Hb_002739_100 Hb_000656_400 Hb_000656_400 Hb_001552_020--Hb_000656_400 Hb_002256_030 Hb_002256_030 Hb_001552_020--Hb_002256_030 Hb_002346_020 Hb_002346_020 Hb_001552_020--Hb_002346_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_000876_070 Hb_000876_070 Hb_029866_090--Hb_000876_070 Hb_020956_020 Hb_020956_020 Hb_029866_090--Hb_020956_020 Hb_003057_100 Hb_003057_100 Hb_029866_090--Hb_003057_100 Hb_029866_090--Hb_002739_100 Hb_005539_350 Hb_005539_350 Hb_029866_090--Hb_005539_350 Hb_002739_100--Hb_000876_070 Hb_005779_060 Hb_005779_060 Hb_002739_100--Hb_005779_060 Hb_007691_030 Hb_007691_030 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_036790_100 Hb_036790_100 Hb_002256_030--Hb_036790_100 Hb_002256_030--Hb_031527_040 Hb_004032_360 Hb_004032_360 Hb_002256_030--Hb_004032_360 Hb_002256_030--Hb_001242_060 Hb_002256_030--Hb_002739_100 Hb_047503_010 Hb_047503_010 Hb_002346_020--Hb_047503_010 Hb_001512_060 Hb_001512_060 Hb_002346_020--Hb_001512_060 Hb_002928_130 Hb_002928_130 Hb_002346_020--Hb_002928_130 Hb_000096_070 Hb_000096_070 Hb_002346_020--Hb_000096_070 Hb_002027_250 Hb_002027_250 Hb_002346_020--Hb_002027_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.6008 59.3801 45.5958 34.3271 77.1902 66.8086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.8836 108.204 78.5785 36.8474 39.6858

CAGE analysis