Hb_003125_200

Information

Type -
Description -
Location Contig3125: 139327-141406
Sequence    

Annotation

kegg
ID rcu:RCOM_1505810
description hypothetical protein
nr
ID XP_012090682.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
swissprot
ID Q9FMV4
description Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana GN=MED30 PE=1 SV=1
trembl
ID A0A067JFJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26438 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33071: 139363-142303 , PASA_asmbl_33072: 139557-141292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_200 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
2 Hb_000465_460 0.0683997913 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
3 Hb_001758_100 0.069633247 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
4 Hb_004931_070 0.0697932004 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
5 Hb_012389_020 0.0709888512 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
6 Hb_027472_040 0.0714911637 - - SKP1 [Hevea brasiliensis]
7 Hb_029388_020 0.0722903878 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002530_030 0.0782983284 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
9 Hb_000317_240 0.078463963 - - PREDICTED: protein DYAD [Jatropha curcas]
10 Hb_000032_270 0.0786603608 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
11 Hb_015279_010 0.0792507412 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_000220_040 0.0794227327 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004491_010 0.0798024814 - - 60S ribosomal protein L51, putative [Ricinus communis]
14 Hb_000667_070 0.0799610146 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_000757_060 0.0804892863 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
16 Hb_000041_270 0.0805686111 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
17 Hb_001157_040 0.0824300343 - - casein kinase, putative [Ricinus communis]
18 Hb_001534_050 0.0826436727 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
19 Hb_000096_070 0.0829485501 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
20 Hb_011609_100 0.0831530206 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003125_200 Hb_003125_200 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_004931_070 Hb_004931_070 Hb_003125_200--Hb_004931_070 Hb_012389_020 Hb_012389_020 Hb_003125_200--Hb_012389_020 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_058999_020 Hb_058999_020 Hb_000465_460--Hb_058999_020 Hb_000317_240 Hb_000317_240 Hb_000465_460--Hb_000317_240 Hb_000465_460--Hb_004931_070 Hb_001242_060 Hb_001242_060 Hb_000465_460--Hb_001242_060 Hb_000465_460--Hb_001758_100 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040 Hb_000120_470 Hb_000120_470 Hb_001758_100--Hb_000120_470 Hb_000504_140 Hb_000504_140 Hb_001758_100--Hb_000504_140 Hb_008900_010 Hb_008900_010 Hb_001758_100--Hb_008900_010 Hb_001758_100--Hb_000317_240 Hb_000757_060 Hb_000757_060 Hb_001758_100--Hb_000757_060 Hb_004931_070--Hb_012389_020 Hb_000421_070 Hb_000421_070 Hb_004931_070--Hb_000421_070 Hb_004931_070--Hb_000317_240 Hb_002530_030 Hb_002530_030 Hb_004931_070--Hb_002530_030 Hb_002192_080 Hb_002192_080 Hb_012389_020--Hb_002192_080 Hb_004586_140 Hb_004586_140 Hb_012389_020--Hb_004586_140 Hb_000302_270 Hb_000302_270 Hb_012389_020--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_012389_020--Hb_000853_430 Hb_000610_050 Hb_000610_050 Hb_027472_040--Hb_000610_050 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_027472_040--Hb_029388_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_027472_040--Hb_007576_080 Hb_000684_380 Hb_000684_380 Hb_029388_020--Hb_000684_380 Hb_005365_030 Hb_005365_030 Hb_029388_020--Hb_005365_030 Hb_002995_020 Hb_002995_020 Hb_029388_020--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_029388_020--Hb_001691_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2263 10.2372 9.13531 6.12112 10.8554 9.85092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2076 18.1062 10.6943 7.94001 3.70829

CAGE analysis