Hb_005914_010

Information

Type -
Description -
Location Contig5914: 8071-11994
Sequence    

Annotation

kegg
ID vvi:100266478
description peroxisomal membrane protein PMP22
nr
ID XP_012069875.1
description PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
swissprot
ID Q9ZS51
description Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1
trembl
ID A0A067L8C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02362 PE=4 SV=1
Gene Ontology
ID GO:0005739
description peroxisomal membrane protein pmp22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50215: 8252-11782
cDNA
(Sanger)
(ID:Location)		 013_O18.ab1: 8328-11614

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_010 0.0 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
2 Hb_004216_050 0.0861088223 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
3 Hb_005305_150 0.0863082717 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
4 Hb_000028_590 0.0884322281 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
5 Hb_011671_440 0.090711519 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
6 Hb_000015_030 0.0955875298 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
7 Hb_009687_010 0.0957048189 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
8 Hb_006698_030 0.097594416 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
9 Hb_004767_080 0.0987087215 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
10 Hb_001653_020 0.0994104248 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
11 Hb_003098_020 0.1003678767 - - 40S ribosomal protein S5B [Hevea brasiliensis]
12 Hb_000496_120 0.1047214115 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
13 Hb_002014_020 0.1073390085 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
14 Hb_006907_130 0.1126545933 - - unnamed protein product [Coffea canephora]
15 Hb_000270_370 0.1131305633 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
16 Hb_032208_060 0.1135150939 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
17 Hb_143766_010 0.1144202656 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
18 Hb_007441_040 0.1149267972 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
19 Hb_007012_060 0.1153832098 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
20 Hb_001427_110 0.1155625264 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005914_010 Hb_005914_010 Hb_004216_050 Hb_004216_050 Hb_005914_010--Hb_004216_050 Hb_005305_150 Hb_005305_150 Hb_005914_010--Hb_005305_150 Hb_000028_590 Hb_000028_590 Hb_005914_010--Hb_000028_590 Hb_011671_440 Hb_011671_440 Hb_005914_010--Hb_011671_440 Hb_000015_030 Hb_000015_030 Hb_005914_010--Hb_000015_030 Hb_009687_010 Hb_009687_010 Hb_005914_010--Hb_009687_010 Hb_004567_120 Hb_004567_120 Hb_004216_050--Hb_004567_120 Hb_004216_050--Hb_005305_150 Hb_006478_150 Hb_006478_150 Hb_004216_050--Hb_006478_150 Hb_010068_020 Hb_010068_020 Hb_004216_050--Hb_010068_020 Hb_000496_120 Hb_000496_120 Hb_004216_050--Hb_000496_120 Hb_004767_080 Hb_004767_080 Hb_004216_050--Hb_004767_080 Hb_003098_020 Hb_003098_020 Hb_005305_150--Hb_003098_020 Hb_005305_150--Hb_004767_080 Hb_001545_170 Hb_001545_170 Hb_005305_150--Hb_001545_170 Hb_005305_150--Hb_000496_120 Hb_001814_050 Hb_001814_050 Hb_005305_150--Hb_001814_050 Hb_003918_010 Hb_003918_010 Hb_000028_590--Hb_003918_010 Hb_000010_460 Hb_000010_460 Hb_000028_590--Hb_000010_460 Hb_008900_010 Hb_008900_010 Hb_000028_590--Hb_008900_010 Hb_001427_110 Hb_001427_110 Hb_000028_590--Hb_001427_110 Hb_000020_060 Hb_000020_060 Hb_000028_590--Hb_000020_060 Hb_000413_280 Hb_000413_280 Hb_011671_440--Hb_000413_280 Hb_091433_020 Hb_091433_020 Hb_011671_440--Hb_091433_020 Hb_011671_440--Hb_004767_080 Hb_180074_010 Hb_180074_010 Hb_011671_440--Hb_180074_010 Hb_000538_120 Hb_000538_120 Hb_011671_440--Hb_000538_120 Hb_001623_060 Hb_001623_060 Hb_000015_030--Hb_001623_060 Hb_006698_030 Hb_006698_030 Hb_000015_030--Hb_006698_030 Hb_000015_030--Hb_011671_440 Hb_000015_030--Hb_009687_010 Hb_001332_040 Hb_001332_040 Hb_000015_030--Hb_001332_040 Hb_000103_270 Hb_000103_270 Hb_009687_010--Hb_000103_270 Hb_105602_010 Hb_105602_010 Hb_009687_010--Hb_105602_010 Hb_002027_140 Hb_002027_140 Hb_009687_010--Hb_002027_140 Hb_009687_010--Hb_006698_030 Hb_000329_760 Hb_000329_760 Hb_009687_010--Hb_000329_760
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5575 5.32785 12.9004 14.4114 11.8747 15.6706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2991 34.3015 20.2938 30.6754 6.41755

CAGE analysis