Hb_006698_030

Information

Type -
Description -
Location Contig6698: 24263-25283
Sequence    

Annotation

kegg
ID pmum:103325004
description uncharacterized LOC103325004
nr
ID XP_012072077.1
description PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04586 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006698_030 0.0 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
2 Hb_003098_020 0.0954800515 - - 40S ribosomal protein S5B [Hevea brasiliensis]
3 Hb_000103_270 0.0971978511 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
4 Hb_005914_010 0.097594416 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
5 Hb_000015_030 0.1001810225 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
6 Hb_005305_150 0.1026384181 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
7 Hb_000496_120 0.1034769463 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
8 Hb_011671_440 0.1038128492 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
9 Hb_002236_040 0.1075049552 - - PREDICTED: cytochrome c [Jatropha curcas]
10 Hb_000329_250 0.1078474128 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
11 Hb_009687_010 0.1080480876 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
12 Hb_000210_120 0.1090812871 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
13 Hb_008695_050 0.1111124963 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001653_020 0.113326765 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
15 Hb_001215_040 0.1162519097 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000896_040 0.1185014948 - - BnaC02g13240D [Brassica napus]
17 Hb_008173_110 0.1233831195 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000136_350 0.1242590951 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
19 Hb_004767_080 0.1245702852 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
20 Hb_033642_080 0.1264523484 - - V-type proton ATPase subunit E [Hevea brasiliensis]

Gene co-expression network

sample Hb_006698_030 Hb_006698_030 Hb_003098_020 Hb_003098_020 Hb_006698_030--Hb_003098_020 Hb_000103_270 Hb_000103_270 Hb_006698_030--Hb_000103_270 Hb_005914_010 Hb_005914_010 Hb_006698_030--Hb_005914_010 Hb_000015_030 Hb_000015_030 Hb_006698_030--Hb_000015_030 Hb_005305_150 Hb_005305_150 Hb_006698_030--Hb_005305_150 Hb_000496_120 Hb_000496_120 Hb_006698_030--Hb_000496_120 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_000136_350 Hb_000136_350 Hb_003098_020--Hb_000136_350 Hb_000210_120 Hb_000210_120 Hb_003098_020--Hb_000210_120 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_000103_270--Hb_000210_120 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000096_160 Hb_000096_160 Hb_000103_270--Hb_000096_160 Hb_000103_270--Hb_005914_170 Hb_000103_270--Hb_003098_020 Hb_004216_050 Hb_004216_050 Hb_005914_010--Hb_004216_050 Hb_005914_010--Hb_005305_150 Hb_000028_590 Hb_000028_590 Hb_005914_010--Hb_000028_590 Hb_011671_440 Hb_011671_440 Hb_005914_010--Hb_011671_440 Hb_005914_010--Hb_000015_030 Hb_005914_010--Hb_009687_010 Hb_001623_060 Hb_001623_060 Hb_000015_030--Hb_001623_060 Hb_000015_030--Hb_011671_440 Hb_000015_030--Hb_009687_010 Hb_001332_040 Hb_001332_040 Hb_000015_030--Hb_001332_040 Hb_004767_080 Hb_004767_080 Hb_005305_150--Hb_004767_080 Hb_005305_150--Hb_004216_050 Hb_001545_170 Hb_001545_170 Hb_005305_150--Hb_001545_170 Hb_005305_150--Hb_000496_120 Hb_001814_050 Hb_001814_050 Hb_005305_150--Hb_001814_050 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_091433_020 Hb_091433_020 Hb_000496_120--Hb_091433_020 Hb_033642_080 Hb_033642_080 Hb_000496_120--Hb_033642_080 Hb_000496_120--Hb_004216_050 Hb_000496_120--Hb_001814_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.20865 5.09813 5.24737 10.3926 3.68252 8.30807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9412 21.7167 8.776 20.0615 3.19284

CAGE analysis