Hb_011671_440

Information

Type -
Description -
Location Contig11671: 336758-348196
Sequence    

Annotation

kegg
ID rcu:RCOM_1502610
description ATP-dependent DNA helicase pcrA, putative
nr
ID XP_002511032.1
description ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
swissprot
ID D1KF50
description ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana GN=SRS2 PE=1 SV=1
trembl
ID B9RA07
description ATP-dependent DNA helicase pcrA, putative OS=Ricinus communis GN=RCOM_1502610 PE=4 SV=1
Gene Ontology
ID GO:0003678
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05190: 339842-343096 , PASA_asmbl_05191: 347733-348599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_440 0.0 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
2 Hb_000413_280 0.0736159064 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
3 Hb_091433_020 0.0839852556 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
4 Hb_005914_010 0.090711519 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
5 Hb_004767_080 0.0922427923 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
6 Hb_180074_010 0.092461406 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
7 Hb_000538_120 0.0977533927 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
8 Hb_033642_080 0.0985406523 - - V-type proton ATPase subunit E [Hevea brasiliensis]
9 Hb_000417_360 0.1005424548 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
10 Hb_000302_140 0.1008879162 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
11 Hb_006698_030 0.1038128492 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
12 Hb_000731_190 0.1044065817 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
13 Hb_000496_120 0.1062131499 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
14 Hb_000329_760 0.1064193723 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
15 Hb_005305_150 0.1074505318 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
16 Hb_003098_020 0.1082128172 - - 40S ribosomal protein S5B [Hevea brasiliensis]
17 Hb_000896_040 0.1098962764 - - BnaC02g13240D [Brassica napus]
18 Hb_003994_260 0.1108054886 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
19 Hb_000525_020 0.1113424312 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_011671_100 0.1114011393 - - 60S ribosomal protein L15 [Populus trichocarpa]

Gene co-expression network

sample Hb_011671_440 Hb_011671_440 Hb_000413_280 Hb_000413_280 Hb_011671_440--Hb_000413_280 Hb_091433_020 Hb_091433_020 Hb_011671_440--Hb_091433_020 Hb_005914_010 Hb_005914_010 Hb_011671_440--Hb_005914_010 Hb_004767_080 Hb_004767_080 Hb_011671_440--Hb_004767_080 Hb_180074_010 Hb_180074_010 Hb_011671_440--Hb_180074_010 Hb_000538_120 Hb_000538_120 Hb_011671_440--Hb_000538_120 Hb_000413_280--Hb_000538_120 Hb_002016_080 Hb_002016_080 Hb_000413_280--Hb_002016_080 Hb_000302_140 Hb_000302_140 Hb_000413_280--Hb_000302_140 Hb_000571_020 Hb_000571_020 Hb_000413_280--Hb_000571_020 Hb_004705_080 Hb_004705_080 Hb_000413_280--Hb_004705_080 Hb_000417_360 Hb_000417_360 Hb_091433_020--Hb_000417_360 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_004216_050 Hb_004216_050 Hb_005914_010--Hb_004216_050 Hb_005305_150 Hb_005305_150 Hb_005914_010--Hb_005305_150 Hb_000028_590 Hb_000028_590 Hb_005914_010--Hb_000028_590 Hb_000015_030 Hb_000015_030 Hb_005914_010--Hb_000015_030 Hb_009687_010 Hb_009687_010 Hb_005914_010--Hb_009687_010 Hb_004767_080--Hb_005305_150 Hb_018124_010 Hb_018124_010 Hb_004767_080--Hb_018124_010 Hb_004767_080--Hb_011671_100 Hb_004767_080--Hb_000417_360 Hb_002056_050 Hb_002056_050 Hb_004767_080--Hb_002056_050 Hb_180074_010--Hb_033642_080 Hb_180074_010--Hb_091433_020 Hb_005391_030 Hb_005391_030 Hb_180074_010--Hb_005391_030 Hb_000896_040 Hb_000896_040 Hb_180074_010--Hb_000896_040 Hb_006478_150 Hb_006478_150 Hb_180074_010--Hb_006478_150 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_000538_120--Hb_000302_140 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000538_120--Hb_000571_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.84505 0.683001 1.19966 1.05474 0.609591 0.711676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73583 2.94294 1.59776 2.0901 0.472443

CAGE analysis