Hb_004705_080

Information

Type transcription factor
Description TF Family: ARF
Location Contig4705: 102709-108764
Sequence    

Annotation

kegg
ID rcu:RCOM_1438160
description transcription factor, putative
nr
ID XP_002512658.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q94JM3
description Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2
trembl
ID B9RFY9
description Auxin response factor OS=Ricinus communis GN=RCOM_1438160 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44235: 102952-108354 , PASA_asmbl_44236: 102767-108354 , PASA_asmbl_44237: 104243-104412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_080 0.0 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
2 Hb_000413_280 0.0903879586 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
3 Hb_008566_050 0.0937065622 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_000111_450 0.0972530948 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
5 Hb_012760_070 0.0999703026 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_002016_080 0.1061152498 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
7 Hb_000424_200 0.1082583285 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
8 Hb_006355_040 0.1098689566 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
9 Hb_010812_120 0.112066296 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
10 Hb_005545_100 0.112371883 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
11 Hb_003783_030 0.1157837974 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
12 Hb_008772_010 0.1161742485 - - conserved hypothetical protein [Ricinus communis]
13 Hb_110560_010 0.1180557257 - - ATP binding protein, putative [Ricinus communis]
14 Hb_003994_260 0.1195067137 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
15 Hb_011671_440 0.1196712929 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
16 Hb_000731_190 0.120451175 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
17 Hb_001718_030 0.1208338195 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
18 Hb_032208_060 0.1226559346 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
19 Hb_000086_280 0.123267506 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
20 Hb_180074_010 0.1237351581 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004705_080 Hb_004705_080 Hb_000413_280 Hb_000413_280 Hb_004705_080--Hb_000413_280 Hb_008566_050 Hb_008566_050 Hb_004705_080--Hb_008566_050 Hb_000111_450 Hb_000111_450 Hb_004705_080--Hb_000111_450 Hb_012760_070 Hb_012760_070 Hb_004705_080--Hb_012760_070 Hb_002016_080 Hb_002016_080 Hb_004705_080--Hb_002016_080 Hb_000424_200 Hb_000424_200 Hb_004705_080--Hb_000424_200 Hb_000538_120 Hb_000538_120 Hb_000413_280--Hb_000538_120 Hb_011671_440 Hb_011671_440 Hb_000413_280--Hb_011671_440 Hb_000413_280--Hb_002016_080 Hb_000302_140 Hb_000302_140 Hb_000413_280--Hb_000302_140 Hb_000571_020 Hb_000571_020 Hb_000413_280--Hb_000571_020 Hb_000039_160 Hb_000039_160 Hb_008566_050--Hb_000039_160 Hb_000117_090 Hb_000117_090 Hb_008566_050--Hb_000117_090 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_000155_200 Hb_000155_200 Hb_008566_050--Hb_000155_200 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130 Hb_013405_140 Hb_013405_140 Hb_000111_450--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_000111_450--Hb_011485_020 Hb_002284_200 Hb_002284_200 Hb_000111_450--Hb_002284_200 Hb_000479_160 Hb_000479_160 Hb_000111_450--Hb_000479_160 Hb_003994_190 Hb_003994_190 Hb_000111_450--Hb_003994_190 Hb_001776_160 Hb_001776_160 Hb_000111_450--Hb_001776_160 Hb_010812_120 Hb_010812_120 Hb_012760_070--Hb_010812_120 Hb_000016_160 Hb_000016_160 Hb_012760_070--Hb_000016_160 Hb_008772_010 Hb_008772_010 Hb_012760_070--Hb_008772_010 Hb_028515_010 Hb_028515_010 Hb_012760_070--Hb_028515_010 Hb_000748_130 Hb_000748_130 Hb_012760_070--Hb_000748_130 Hb_000175_060 Hb_000175_060 Hb_012760_070--Hb_000175_060 Hb_002016_080--Hb_013405_140 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_000673_020 Hb_000673_020 Hb_002016_080--Hb_000673_020 Hb_003783_030 Hb_003783_030 Hb_002016_080--Hb_003783_030 Hb_013399_050 Hb_013399_050 Hb_000424_200--Hb_013399_050 Hb_158445_010 Hb_158445_010 Hb_000424_200--Hb_158445_010 Hb_007037_020 Hb_007037_020 Hb_000424_200--Hb_007037_020 Hb_000327_060 Hb_000327_060 Hb_000424_200--Hb_000327_060 Hb_006355_040 Hb_006355_040 Hb_000424_200--Hb_006355_040 Hb_005843_140 Hb_005843_140 Hb_000424_200--Hb_005843_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83997 9.96742 15.2589 13.0581 6.54176 7.54391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1442 33.2016 29.2157 17.6731 6.07746

CAGE analysis