Hb_000039_160

Information

Type -
Description -
Location Contig39: 196576-201271
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03280g
description POPTRDRAFT_817748; ABC1 family protein
nr
ID XP_012091475.1
description PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
swissprot
ID Q55G83
description Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1
trembl
ID A0A067JAM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21342 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable serine threonine-protein kinase abkc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39056: 197045-197511 , PASA_asmbl_39057: 196898-199898 , PASA_asmbl_39058: 197355-199097 , PASA_asmbl_39059: 198422-198733 , PASA_asmbl_39060: 199904-201110 , PASA_asmbl_39061: 202141-202973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_160 0.0 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
2 Hb_008566_050 0.0701358905 - - phosphoglycerate mutase, putative [Ricinus communis]
3 Hb_000117_090 0.0747640546 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
4 Hb_000529_170 0.0771631716 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
5 Hb_008725_260 0.0889325564 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
6 Hb_001245_100 0.0910301839 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
7 Hb_000155_200 0.0926184489 - - Rab7 [Hevea brasiliensis]
8 Hb_002878_020 0.0934671624 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_002046_180 0.0950025107 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
10 Hb_000120_960 0.0950363396 - - isocitrate dehydrogenase, putative [Ricinus communis]
11 Hb_005228_070 0.0953380269 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
12 Hb_001314_070 0.0959726137 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000250_060 0.0970349826 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
14 Hb_012019_010 0.0972108367 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
15 Hb_002110_150 0.0972782499 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
16 Hb_005539_280 0.0980022049 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
17 Hb_000062_220 0.0982501845 - - BnaC02g35870D [Brassica napus]
18 Hb_007317_200 0.0988407317 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000063_140 0.0995846633 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
20 Hb_001726_020 0.099929177 - - PREDICTED: endophilin-A1 [Jatropha curcas]

Gene co-expression network

sample Hb_000039_160 Hb_000039_160 Hb_008566_050 Hb_008566_050 Hb_000039_160--Hb_008566_050 Hb_000117_090 Hb_000117_090 Hb_000039_160--Hb_000117_090 Hb_000529_170 Hb_000529_170 Hb_000039_160--Hb_000529_170 Hb_008725_260 Hb_008725_260 Hb_000039_160--Hb_008725_260 Hb_001245_100 Hb_001245_100 Hb_000039_160--Hb_001245_100 Hb_000155_200 Hb_000155_200 Hb_000039_160--Hb_000155_200 Hb_008566_050--Hb_000117_090 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_008566_050--Hb_000155_200 Hb_004705_080 Hb_004705_080 Hb_008566_050--Hb_004705_080 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130 Hb_000366_090 Hb_000366_090 Hb_000117_090--Hb_000366_090 Hb_168319_030 Hb_168319_030 Hb_000117_090--Hb_168319_030 Hb_021409_030 Hb_021409_030 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250 Hb_001726_020 Hb_001726_020 Hb_000529_170--Hb_001726_020 Hb_005539_280 Hb_005539_280 Hb_000529_170--Hb_005539_280 Hb_000250_060 Hb_000250_060 Hb_000529_170--Hb_000250_060 Hb_001226_040 Hb_001226_040 Hb_000529_170--Hb_001226_040 Hb_000529_170--Hb_001245_100 Hb_002110_150 Hb_002110_150 Hb_008725_260--Hb_002110_150 Hb_002046_180 Hb_002046_180 Hb_008725_260--Hb_002046_180 Hb_000866_220 Hb_000866_220 Hb_008725_260--Hb_000866_220 Hb_009178_030 Hb_009178_030 Hb_008725_260--Hb_009178_030 Hb_000876_070 Hb_000876_070 Hb_008725_260--Hb_000876_070 Hb_007532_030 Hb_007532_030 Hb_008725_260--Hb_007532_030 Hb_001766_060 Hb_001766_060 Hb_001245_100--Hb_001766_060 Hb_000667_070 Hb_000667_070 Hb_001245_100--Hb_000667_070 Hb_005846_040 Hb_005846_040 Hb_001245_100--Hb_005846_040 Hb_027380_050 Hb_027380_050 Hb_001245_100--Hb_027380_050 Hb_003151_040 Hb_003151_040 Hb_001245_100--Hb_003151_040 Hb_001245_100--Hb_002046_180 Hb_012114_070 Hb_012114_070 Hb_000155_200--Hb_012114_070 Hb_000205_090 Hb_000205_090 Hb_000155_200--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000155_200--Hb_004109_170 Hb_000367_160 Hb_000367_160 Hb_000155_200--Hb_000367_160 Hb_000120_960 Hb_000120_960 Hb_000155_200--Hb_000120_960 Hb_000340_570 Hb_000340_570 Hb_000155_200--Hb_000340_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6231 14.1662 14.7085 8.62572 11.0447 9.78334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3405 26.0377 28.048 10.6025 9.36753

CAGE analysis