Hb_001437_150

Information

Type -
Description -
Location Contig1437: 158053-159441
Sequence    

Annotation

kegg
ID rcu:RCOM_0472310
description snf1-kinase beta subunit, plants, putative
nr
ID XP_012078888.1
description PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
swissprot
ID Q9ZUU8
description SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
trembl
ID B9SCG7
description Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_0472310 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related protein kinase regulatory subunit beta-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11528: 156028-159248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_150 0.0 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
2 Hb_000856_380 0.0775126028 - - ubiquitin-conjugating enzyme [Medicago truncatula]
3 Hb_001123_130 0.0845740762 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000527_060 0.0845995524 - - Protein C20orf11, putative [Ricinus communis]
5 Hb_004162_130 0.0868775593 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008566_050 0.0884789412 - - phosphoglycerate mutase, putative [Ricinus communis]
7 Hb_012286_030 0.0905914253 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
8 Hb_000667_070 0.0917202645 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
9 Hb_011519_010 0.0922558119 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
10 Hb_000367_160 0.0933109901 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
11 Hb_000155_200 0.094436542 - - Rab7 [Hevea brasiliensis]
12 Hb_164010_040 0.0957113169 - - serine/threonine protein kinase, putative [Ricinus communis]
13 Hb_024439_010 0.0960560314 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
14 Hb_180424_010 0.0962030771 - - Charged multivesicular body protein, putative [Ricinus communis]
15 Hb_000175_340 0.0963564327 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
16 Hb_000221_190 0.0974602935 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
17 Hb_001245_100 0.0982120807 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
18 Hb_021068_040 0.1000163617 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
19 Hb_000115_220 0.1000342432 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
20 Hb_000733_200 0.1000650137 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001437_150 Hb_001437_150 Hb_000856_380 Hb_000856_380 Hb_001437_150--Hb_000856_380 Hb_001123_130 Hb_001123_130 Hb_001437_150--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_001437_150--Hb_000527_060 Hb_004162_130 Hb_004162_130 Hb_001437_150--Hb_004162_130 Hb_008566_050 Hb_008566_050 Hb_001437_150--Hb_008566_050 Hb_012286_030 Hb_012286_030 Hb_001437_150--Hb_012286_030 Hb_002234_100 Hb_002234_100 Hb_000856_380--Hb_002234_100 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_010560_020 Hb_010560_020 Hb_000856_380--Hb_010560_020 Hb_001123_130--Hb_000527_060 Hb_000261_140 Hb_000261_140 Hb_001123_130--Hb_000261_140 Hb_000667_070 Hb_000667_070 Hb_001123_130--Hb_000667_070 Hb_002995_020 Hb_002995_020 Hb_001123_130--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_001123_130--Hb_000656_240 Hb_001484_070 Hb_001484_070 Hb_001123_130--Hb_001484_070 Hb_000527_060--Hb_012286_030 Hb_000527_060--Hb_000261_140 Hb_000115_220 Hb_000115_220 Hb_000527_060--Hb_000115_220 Hb_004143_150 Hb_004143_150 Hb_000527_060--Hb_004143_150 Hb_000920_110 Hb_000920_110 Hb_000527_060--Hb_000920_110 Hb_000375_350 Hb_000375_350 Hb_004162_130--Hb_000375_350 Hb_164010_040 Hb_164010_040 Hb_004162_130--Hb_164010_040 Hb_001300_150 Hb_001300_150 Hb_004162_130--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_004162_130--Hb_003728_060 Hb_000733_200 Hb_000733_200 Hb_004162_130--Hb_000733_200 Hb_011519_010 Hb_011519_010 Hb_004162_130--Hb_011519_010 Hb_000039_160 Hb_000039_160 Hb_008566_050--Hb_000039_160 Hb_000117_090 Hb_000117_090 Hb_008566_050--Hb_000117_090 Hb_000155_200 Hb_000155_200 Hb_008566_050--Hb_000155_200 Hb_004705_080 Hb_004705_080 Hb_008566_050--Hb_004705_080 Hb_008566_050--Hb_001123_130 Hb_000580_090 Hb_000580_090 Hb_012286_030--Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_012286_030--Hb_004109_170 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_004116_190 Hb_004116_190 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.177 10.5592 16.0032 12.3096 8.4799 8.92185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4032 24.1759 17.5697 5.74038 5.85652

CAGE analysis