Hb_010560_020

Information

Type -
Description -
Location Contig10560: 12130-17555
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011248mg
description hypothetical protein
nr
ID XP_012091257.1
description PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JA98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21148 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01857: 12132-17550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010560_020 0.0 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
2 Hb_004453_170 0.0821403568 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
3 Hb_000367_160 0.0929246799 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
4 Hb_000915_090 0.0946839588 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
5 Hb_000856_380 0.0954981661 - - ubiquitin-conjugating enzyme [Medicago truncatula]
6 Hb_000155_200 0.0958163587 - - Rab7 [Hevea brasiliensis]
7 Hb_000462_130 0.0962839901 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
8 Hb_129204_030 0.0995114219 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
9 Hb_000635_180 0.1002764452 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_001123_130 0.1003569161 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
11 Hb_004678_040 0.1010354665 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
12 Hb_002234_100 0.102536589 - - F-box family protein, putative isoform 1 [Theobroma cacao]
13 Hb_012286_030 0.102557526 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
14 Hb_002284_010 0.1037109346 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000000_210 0.1043937068 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
16 Hb_030736_080 0.1044510841 - - conserved hypothetical protein [Ricinus communis]
17 Hb_048476_110 0.1046235378 - - PREDICTED: adagio protein 3 [Jatropha curcas]
18 Hb_001437_150 0.1047817177 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
19 Hb_028995_040 0.1055467523 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
20 Hb_007044_120 0.1058071911 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_010560_020 Hb_010560_020 Hb_004453_170 Hb_004453_170 Hb_010560_020--Hb_004453_170 Hb_000367_160 Hb_000367_160 Hb_010560_020--Hb_000367_160 Hb_000915_090 Hb_000915_090 Hb_010560_020--Hb_000915_090 Hb_000856_380 Hb_000856_380 Hb_010560_020--Hb_000856_380 Hb_000155_200 Hb_000155_200 Hb_010560_020--Hb_000155_200 Hb_000462_130 Hb_000462_130 Hb_010560_020--Hb_000462_130 Hb_001832_060 Hb_001832_060 Hb_004453_170--Hb_001832_060 Hb_001195_480 Hb_001195_480 Hb_004453_170--Hb_001195_480 Hb_004453_170--Hb_000462_130 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_012286_030 Hb_012286_030 Hb_000367_160--Hb_012286_030 Hb_000367_160--Hb_000155_200 Hb_019280_050 Hb_019280_050 Hb_000367_160--Hb_019280_050 Hb_004410_080 Hb_004410_080 Hb_000367_160--Hb_004410_080 Hb_000193_110 Hb_000193_110 Hb_000367_160--Hb_000193_110 Hb_000336_150 Hb_000336_150 Hb_000367_160--Hb_000336_150 Hb_004635_100 Hb_004635_100 Hb_000915_090--Hb_004635_100 Hb_002163_020 Hb_002163_020 Hb_000915_090--Hb_002163_020 Hb_008725_260 Hb_008725_260 Hb_000915_090--Hb_008725_260 Hb_010422_060 Hb_010422_060 Hb_000915_090--Hb_010422_060 Hb_000240_090 Hb_000240_090 Hb_000915_090--Hb_000240_090 Hb_004109_170 Hb_004109_170 Hb_000915_090--Hb_004109_170 Hb_002234_100 Hb_002234_100 Hb_000856_380--Hb_002234_100 Hb_001437_150 Hb_001437_150 Hb_000856_380--Hb_001437_150 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000856_380--Hb_000367_160 Hb_012114_070 Hb_012114_070 Hb_000155_200--Hb_012114_070 Hb_000205_090 Hb_000205_090 Hb_000155_200--Hb_000205_090 Hb_000155_200--Hb_004109_170 Hb_000120_960 Hb_000120_960 Hb_000155_200--Hb_000120_960 Hb_000340_570 Hb_000340_570 Hb_000155_200--Hb_000340_570 Hb_001534_050 Hb_001534_050 Hb_000462_130--Hb_001534_050 Hb_000462_130--Hb_001832_060 Hb_028995_040 Hb_028995_040 Hb_000462_130--Hb_028995_040 Hb_000698_030 Hb_000698_030 Hb_000462_130--Hb_000698_030 Hb_003078_040 Hb_003078_040 Hb_000462_130--Hb_003078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3139 27.1566 35.4553 20.1318 23.7941 26.075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.2752 55.49 48.5482 11.9898 8.46128

CAGE analysis