Hb_180424_010

Information

Type -
Description -
Location Contig180424: 1603-14295
Sequence    

Annotation

kegg
ID rcu:RCOM_1305670
description Charged multivesicular body protein, putative
nr
ID XP_002518614.1
description Charged multivesicular body protein, putative [Ricinus communis]
swissprot
ID Q54JK4
description Charged multivesicular body protein 5 OS=Dictyostelium discoideum GN=chmp5 PE=3 SV=1
trembl
ID B9RXZ5
description Charged multivesicular body protein, putative OS=Ricinus communis GN=RCOM_1305670 PE=4 SV=1
Gene Ontology
ID GO:0007034
description charged multivesicular body protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17465: 6391-14296
cDNA
(Sanger)
(ID:Location)		 004_I03.ab1: 6564-14049 , 019_D02.ab1: 6391-12903 , 046_K06.ab1: 6391-12892

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180424_010 0.0 - - Charged multivesicular body protein, putative [Ricinus communis]
2 Hb_000000_210 0.0790475379 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
3 Hb_000853_430 0.0830889946 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
4 Hb_005488_140 0.0848754302 - - 30S ribosomal protein S5, putative [Ricinus communis]
5 Hb_000856_380 0.0870672306 - - ubiquitin-conjugating enzyme [Medicago truncatula]
6 Hb_004410_080 0.0943405547 - - cellular nucleic acid binding protein, putative [Ricinus communis]
7 Hb_004678_040 0.0952919015 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
8 Hb_011519_010 0.0953754633 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
9 Hb_153553_030 0.0960321418 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
10 Hb_001437_150 0.0962030771 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
11 Hb_004800_250 0.0975364476 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
12 Hb_000362_200 0.0995173889 - - exonuclease family protein [Populus trichocarpa]
13 Hb_000638_290 0.1001639598 - - PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
14 Hb_003052_190 0.1017416897 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
15 Hb_004093_090 0.1023036492 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
16 Hb_000302_270 0.1026325417 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_000622_180 0.1027876429 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
18 Hb_000633_020 0.103144321 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
19 Hb_003621_020 0.1040052146 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
20 Hb_000367_160 0.1056081753 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]

Gene co-expression network

sample Hb_180424_010 Hb_180424_010 Hb_000000_210 Hb_000000_210 Hb_180424_010--Hb_000000_210 Hb_000853_430 Hb_000853_430 Hb_180424_010--Hb_000853_430 Hb_005488_140 Hb_005488_140 Hb_180424_010--Hb_005488_140 Hb_000856_380 Hb_000856_380 Hb_180424_010--Hb_000856_380 Hb_004410_080 Hb_004410_080 Hb_180424_010--Hb_004410_080 Hb_004678_040 Hb_004678_040 Hb_180424_010--Hb_004678_040 Hb_048476_110 Hb_048476_110 Hb_000000_210--Hb_048476_110 Hb_011519_010 Hb_011519_010 Hb_000000_210--Hb_011519_010 Hb_000000_210--Hb_000853_430 Hb_004934_030 Hb_004934_030 Hb_000000_210--Hb_004934_030 Hb_000000_210--Hb_004678_040 Hb_001305_010 Hb_001305_010 Hb_000853_430--Hb_001305_010 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_000853_430--Hb_000302_270 Hb_000185_070 Hb_000185_070 Hb_005488_140--Hb_000185_070 Hb_005488_140--Hb_000302_270 Hb_153553_030 Hb_153553_030 Hb_005488_140--Hb_153553_030 Hb_000010_110 Hb_000010_110 Hb_005488_140--Hb_000010_110 Hb_003001_080 Hb_003001_080 Hb_005488_140--Hb_003001_080 Hb_002234_100 Hb_002234_100 Hb_000856_380--Hb_002234_100 Hb_001437_150 Hb_001437_150 Hb_000856_380--Hb_001437_150 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_010560_020 Hb_010560_020 Hb_000856_380--Hb_010560_020 Hb_000633_020 Hb_000633_020 Hb_004410_080--Hb_000633_020 Hb_000656_240 Hb_000656_240 Hb_004410_080--Hb_000656_240 Hb_004157_020 Hb_004157_020 Hb_004410_080--Hb_004157_020 Hb_032264_070 Hb_032264_070 Hb_004410_080--Hb_032264_070 Hb_004410_080--Hb_011519_010 Hb_004410_080--Hb_000367_160 Hb_004678_040--Hb_000008_470 Hb_000521_320 Hb_000521_320 Hb_004678_040--Hb_000521_320 Hb_004678_040--Hb_000302_270 Hb_025645_010 Hb_025645_010 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
147.51 102.462 171.055 66.5605 77.6175 87.3627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.076 188.863 123.711 48.9521 60.916

CAGE analysis