Hb_004157_020

Information

Type -
Description -
Location Contig4157: 10958-11401
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09030g
description hypothetical protein
nr
ID XP_012472777.1
description PREDICTED: histone H2B-like [Gossypium raimondii]
swissprot
ID O22582
description Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3
trembl
ID A0A0D2P4M3
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G003900 PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone h2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41111: 10593-11482 , PASA_asmbl_41112: 10721-11477
cDNA
(Sanger)
(ID:Location)		 004_I24.ab1: 10830-11475 , 010_M17.ab1: 10721-11477 , 015_A06.ab1: 11039-11475 , 020_J02.ab1: 10721-11477 , 022_J20.ab1: 11255-11471 , 036_A22.ab1: 10741-11471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004157_020 0.0 - - PREDICTED: histone H2B-like [Gossypium raimondii]
2 Hb_004889_020 0.0662341061 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
3 Hb_004410_080 0.0775646254 - - cellular nucleic acid binding protein, putative [Ricinus communis]
4 Hb_018133_020 0.0793518074 - - transporter, putative [Ricinus communis]
5 Hb_000633_020 0.079808245 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
6 Hb_000676_390 0.0811663385 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
7 Hb_026889_030 0.0821487601 - - protein with unknown function [Ricinus communis]
8 Hb_003077_020 0.0842941094 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_012114_070 0.0860956683 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
10 Hb_001123_130 0.0862823059 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000367_160 0.0871059303 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
12 Hb_004109_170 0.0875780581 - - PREDICTED: probable ribokinase [Jatropha curcas]
13 Hb_000155_200 0.0891020001 - - Rab7 [Hevea brasiliensis]
14 Hb_011512_070 0.0892331041 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
15 Hb_001493_050 0.0898232718 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
16 Hb_000827_050 0.0900631857 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_001931_010 0.0921029204 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
18 Hb_000656_240 0.0923297551 - - proteasome subunit alpha type, putative [Ricinus communis]
19 Hb_000261_140 0.092831872 - - -
20 Hb_002540_080 0.0939001514 - - cysteine-type peptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004157_020 Hb_004157_020 Hb_004889_020 Hb_004889_020 Hb_004157_020--Hb_004889_020 Hb_004410_080 Hb_004410_080 Hb_004157_020--Hb_004410_080 Hb_018133_020 Hb_018133_020 Hb_004157_020--Hb_018133_020 Hb_000633_020 Hb_000633_020 Hb_004157_020--Hb_000633_020 Hb_000676_390 Hb_000676_390 Hb_004157_020--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_004157_020--Hb_026889_030 Hb_004889_020--Hb_026889_030 Hb_006326_040 Hb_006326_040 Hb_004889_020--Hb_006326_040 Hb_157022_010 Hb_157022_010 Hb_004889_020--Hb_157022_010 Hb_004889_020--Hb_000676_390 Hb_008071_020 Hb_008071_020 Hb_004889_020--Hb_008071_020 Hb_004410_080--Hb_000633_020 Hb_000656_240 Hb_000656_240 Hb_004410_080--Hb_000656_240 Hb_032264_070 Hb_032264_070 Hb_004410_080--Hb_032264_070 Hb_011519_010 Hb_011519_010 Hb_004410_080--Hb_011519_010 Hb_000367_160 Hb_000367_160 Hb_004410_080--Hb_000367_160 Hb_131181_010 Hb_131181_010 Hb_018133_020--Hb_131181_010 Hb_026053_020 Hb_026053_020 Hb_018133_020--Hb_026053_020 Hb_001279_080 Hb_001279_080 Hb_018133_020--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_018133_020--Hb_001318_260 Hb_012114_070 Hb_012114_070 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180 Hb_146673_010 Hb_146673_010 Hb_000633_020--Hb_146673_010 Hb_004096_090 Hb_004096_090 Hb_000633_020--Hb_004096_090 Hb_011512_070 Hb_011512_070 Hb_000633_020--Hb_011512_070 Hb_000236_390 Hb_000236_390 Hb_000633_020--Hb_000236_390 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_000676_390--Hb_008071_020 Hb_000676_390--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
265.675 222.863 586.858 308.442 239.113 354.927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
520.72 861.141 535.902 205.438 324.996

CAGE analysis