Hb_004889_020

Information

Type -
Description -
Location Contig4889: 28906-30265
Sequence    

Annotation

kegg
ID rcu:RCOM_0053910
description Charged multivesicular body protein, putative
nr
ID XP_012064631.1
description PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
swissprot
ID Q8GXN6
description Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1
trembl
ID A0A067LAQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22917 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 20 homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004889_020 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
2 Hb_026889_030 0.0656545712 - - protein with unknown function [Ricinus communis]
3 Hb_004157_020 0.0662341061 - - PREDICTED: histone H2B-like [Gossypium raimondii]
4 Hb_006326_040 0.0680473159 - - conserved hypothetical protein [Ricinus communis]
5 Hb_157022_010 0.0699544211 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
6 Hb_000676_390 0.0729031189 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
7 Hb_008071_020 0.0734108736 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
8 Hb_001931_010 0.0759211993 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
9 Hb_002343_060 0.0804865375 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
10 Hb_000827_050 0.0805974343 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
11 Hb_004889_010 0.0814057109 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
12 Hb_010361_010 0.0837428519 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
13 Hb_000566_120 0.0842100437 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
14 Hb_000045_310 0.0852844409 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
15 Hb_001013_030 0.0853525571 - - GTP-binding protein yptv3, putative [Ricinus communis]
16 Hb_005551_040 0.0873079613 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
17 Hb_002540_080 0.0881580953 - - cysteine-type peptidase, putative [Ricinus communis]
18 Hb_017895_040 0.0881784374 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
19 Hb_000403_060 0.0893748378 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
20 Hb_001123_130 0.0894118283 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004889_020 Hb_004889_020 Hb_026889_030 Hb_026889_030 Hb_004889_020--Hb_026889_030 Hb_004157_020 Hb_004157_020 Hb_004889_020--Hb_004157_020 Hb_006326_040 Hb_006326_040 Hb_004889_020--Hb_006326_040 Hb_157022_010 Hb_157022_010 Hb_004889_020--Hb_157022_010 Hb_000676_390 Hb_000676_390 Hb_004889_020--Hb_000676_390 Hb_008071_020 Hb_008071_020 Hb_004889_020--Hb_008071_020 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050 Hb_026889_030--Hb_000676_390 Hb_004410_080 Hb_004410_080 Hb_004157_020--Hb_004410_080 Hb_018133_020 Hb_018133_020 Hb_004157_020--Hb_018133_020 Hb_000633_020 Hb_000633_020 Hb_004157_020--Hb_000633_020 Hb_004157_020--Hb_000676_390 Hb_004157_020--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_006326_040--Hb_001931_010 Hb_006326_040--Hb_008071_020 Hb_000505_130 Hb_000505_130 Hb_006326_040--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_006326_040--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_006326_040--Hb_028396_010 Hb_000403_060 Hb_000403_060 Hb_157022_010--Hb_000403_060 Hb_001484_070 Hb_001484_070 Hb_157022_010--Hb_001484_070 Hb_000236_040 Hb_000236_040 Hb_157022_010--Hb_000236_040 Hb_157022_010--Hb_026889_030 Hb_157022_010--Hb_000827_050 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_000676_390--Hb_008071_020 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5314 6.8131 23.8553 19.0333 9.51279 16.7682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3173 36.6072 24.4672 11.2069 13.465

CAGE analysis